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A framework based on deep neural networks to extract anatomy of mosquitoes from images

We design a framework based on Mask Region-based Convolutional Neural Network to automatically detect and separately extract anatomical components of mosquitoes-thorax, wings, abdomen and legs from images. Our training dataset consisted of 1500 smartphone images of nine mosquito species trapped in F...

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Autores principales: Minakshi, Mona, Bharti, Pratool, Bhuiyan, Tanvir, Kariev, Sherzod, Chellappan, Sriram
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7398923/
https://www.ncbi.nlm.nih.gov/pubmed/32747744
http://dx.doi.org/10.1038/s41598-020-69964-2
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author Minakshi, Mona
Bharti, Pratool
Bhuiyan, Tanvir
Kariev, Sherzod
Chellappan, Sriram
author_facet Minakshi, Mona
Bharti, Pratool
Bhuiyan, Tanvir
Kariev, Sherzod
Chellappan, Sriram
author_sort Minakshi, Mona
collection PubMed
description We design a framework based on Mask Region-based Convolutional Neural Network to automatically detect and separately extract anatomical components of mosquitoes-thorax, wings, abdomen and legs from images. Our training dataset consisted of 1500 smartphone images of nine mosquito species trapped in Florida. In the proposed technique, the first step is to detect anatomical components within a mosquito image. Then, we localize and classify the extracted anatomical components, while simultaneously adding a branch in the neural network architecture to segment pixels containing only the anatomical components. Evaluation results are favorable. To evaluate generality, we test our architecture trained only with mosquito images on bumblebee images. We again reveal favorable results, particularly in extracting wings. Our techniques in this paper have practical applications in public health, taxonomy and citizen-science efforts.
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spelling pubmed-73989232020-08-04 A framework based on deep neural networks to extract anatomy of mosquitoes from images Minakshi, Mona Bharti, Pratool Bhuiyan, Tanvir Kariev, Sherzod Chellappan, Sriram Sci Rep Article We design a framework based on Mask Region-based Convolutional Neural Network to automatically detect and separately extract anatomical components of mosquitoes-thorax, wings, abdomen and legs from images. Our training dataset consisted of 1500 smartphone images of nine mosquito species trapped in Florida. In the proposed technique, the first step is to detect anatomical components within a mosquito image. Then, we localize and classify the extracted anatomical components, while simultaneously adding a branch in the neural network architecture to segment pixels containing only the anatomical components. Evaluation results are favorable. To evaluate generality, we test our architecture trained only with mosquito images on bumblebee images. We again reveal favorable results, particularly in extracting wings. Our techniques in this paper have practical applications in public health, taxonomy and citizen-science efforts. Nature Publishing Group UK 2020-08-03 /pmc/articles/PMC7398923/ /pubmed/32747744 http://dx.doi.org/10.1038/s41598-020-69964-2 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Minakshi, Mona
Bharti, Pratool
Bhuiyan, Tanvir
Kariev, Sherzod
Chellappan, Sriram
A framework based on deep neural networks to extract anatomy of mosquitoes from images
title A framework based on deep neural networks to extract anatomy of mosquitoes from images
title_full A framework based on deep neural networks to extract anatomy of mosquitoes from images
title_fullStr A framework based on deep neural networks to extract anatomy of mosquitoes from images
title_full_unstemmed A framework based on deep neural networks to extract anatomy of mosquitoes from images
title_short A framework based on deep neural networks to extract anatomy of mosquitoes from images
title_sort framework based on deep neural networks to extract anatomy of mosquitoes from images
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7398923/
https://www.ncbi.nlm.nih.gov/pubmed/32747744
http://dx.doi.org/10.1038/s41598-020-69964-2
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