CerealsDB—new tools for the analysis of the wheat genome: update 2020

CerealsDB (www.cerealsdb.uk.net) is an online repository of mainly hexaploid wheat (Triticum aestivum) single nucleotide polymorphisms (SNPs) and genotyping data. The CerealsDB website has been designed to enable wheat breeders and scientists to select the appropriate markers for research breeding t...

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Autores principales: Wilkinson, Paul A, Allen, Alexandra M, Tyrrell, Simon, Wingen, Luzie U, Bian, Xingdong, Winfield, Mark O, Burridge, Amanda, Shaw, Daniel S, Zaucha, Jan, Griffiths, Simon, Davey, Robert P, Edwards, Keith J, Barker, Gary L A
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2020
Materias:
Database Update
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7402920/
https://www.ncbi.nlm.nih.gov/pubmed/32754757
http://dx.doi.org/10.1093/database/baaa060
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author Wilkinson, Paul A
Allen, Alexandra M
Tyrrell, Simon
Wingen, Luzie U
Bian, Xingdong
Winfield, Mark O
Burridge, Amanda
Shaw, Daniel S
Zaucha, Jan
Griffiths, Simon
Davey, Robert P
Edwards, Keith J
Barker, Gary L A
author_facet Wilkinson, Paul A
Allen, Alexandra M
Tyrrell, Simon
Wingen, Luzie U
Bian, Xingdong
Winfield, Mark O
Burridge, Amanda
Shaw, Daniel S
Zaucha, Jan
Griffiths, Simon
Davey, Robert P
Edwards, Keith J
Barker, Gary L A
author_sort Wilkinson, Paul A
collection PubMed
description CerealsDB (www.cerealsdb.uk.net) is an online repository of mainly hexaploid wheat (Triticum aestivum) single nucleotide polymorphisms (SNPs) and genotyping data. The CerealsDB website has been designed to enable wheat breeders and scientists to select the appropriate markers for research breeding tasks, such as marker-assisted selection. We report a large update of genotyping information for over 6000 wheat accessions and describe new webtools for exploring and visualizing the data. We also describe a new database of quantitative trait loci that links phenotypic traits to CerealsDB SNP markers and allelic scores for each of those markers. CerealsDB is an open-access website that hosts information on wheat SNPs considered useful for both plant breeders and research scientists. The latest CerealsDB database is available at https://www.cerealsdb.uk.net/cerealgenomics/CerealsDB/indexNEW.php.
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spelling pubmed-74029202020-08-07 CerealsDB—new tools for the analysis of the wheat genome: update 2020 Wilkinson, Paul A Allen, Alexandra M Tyrrell, Simon Wingen, Luzie U Bian, Xingdong Winfield, Mark O Burridge, Amanda Shaw, Daniel S Zaucha, Jan Griffiths, Simon Davey, Robert P Edwards, Keith J Barker, Gary L A Database (Oxford) Database Update CerealsDB (www.cerealsdb.uk.net) is an online repository of mainly hexaploid wheat (Triticum aestivum) single nucleotide polymorphisms (SNPs) and genotyping data. The CerealsDB website has been designed to enable wheat breeders and scientists to select the appropriate markers for research breeding tasks, such as marker-assisted selection. We report a large update of genotyping information for over 6000 wheat accessions and describe new webtools for exploring and visualizing the data. We also describe a new database of quantitative trait loci that links phenotypic traits to CerealsDB SNP markers and allelic scores for each of those markers. CerealsDB is an open-access website that hosts information on wheat SNPs considered useful for both plant breeders and research scientists. The latest CerealsDB database is available at https://www.cerealsdb.uk.net/cerealgenomics/CerealsDB/indexNEW.php. Oxford University Press 2020-08-04 /pmc/articles/PMC7402920/ /pubmed/32754757 http://dx.doi.org/10.1093/database/baaa060 Text en © The Author(s) 2020. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Database Update
Wilkinson, Paul A
Allen, Alexandra M
Tyrrell, Simon
Wingen, Luzie U
Bian, Xingdong
Winfield, Mark O
Burridge, Amanda
Shaw, Daniel S
Zaucha, Jan
Griffiths, Simon
Davey, Robert P
Edwards, Keith J
Barker, Gary L A
CerealsDB—new tools for the analysis of the wheat genome: update 2020
title CerealsDB—new tools for the analysis of the wheat genome: update 2020
title_full CerealsDB—new tools for the analysis of the wheat genome: update 2020
title_fullStr CerealsDB—new tools for the analysis of the wheat genome: update 2020
title_full_unstemmed CerealsDB—new tools for the analysis of the wheat genome: update 2020
title_short CerealsDB—new tools for the analysis of the wheat genome: update 2020
title_sort cerealsdb—new tools for the analysis of the wheat genome: update 2020
topic Database Update
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7402920/
https://www.ncbi.nlm.nih.gov/pubmed/32754757
http://dx.doi.org/10.1093/database/baaa060
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