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Genetic and polygenic risk score analysis for Alzheimer's disease in the Chinese population

INTRODUCTION: Dozens of Alzheimer's disease (AD)‐associated loci have been identified in European‐descent populations, but their effects have not been thoroughly investigated in the Hong Kong Chinese population. METHODS: TaqMan array genotyping was performed for known AD‐associated variants in...

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Autores principales: Zhou, Xiaopu, Chen, Yu, Ip, Fanny C. F., Lai, Nicole C. H., Li, Yolanda Y. T., Jiang, Yuanbing, Zhong, Huan, Chen, Yuewen, Zhang, Yulin, Ma, Shuangshuang, Lo, Ronnie M. N., Cheung, Kit, Tong, Estella P. S., Ko, Ho, Shoai, Maryam, Mok, Kin Y., Hardy, John, Mok, Vincent C. T., Kwok, Timothy C. Y., Fu, Amy K. Y., Ip, Nancy Y.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7403835/
https://www.ncbi.nlm.nih.gov/pubmed/32775599
http://dx.doi.org/10.1002/dad2.12074
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author Zhou, Xiaopu
Chen, Yu
Ip, Fanny C. F.
Lai, Nicole C. H.
Li, Yolanda Y. T.
Jiang, Yuanbing
Zhong, Huan
Chen, Yuewen
Zhang, Yulin
Ma, Shuangshuang
Lo, Ronnie M. N.
Cheung, Kit
Tong, Estella P. S.
Ko, Ho
Shoai, Maryam
Mok, Kin Y.
Hardy, John
Mok, Vincent C. T.
Kwok, Timothy C. Y.
Fu, Amy K. Y.
Ip, Nancy Y.
author_facet Zhou, Xiaopu
Chen, Yu
Ip, Fanny C. F.
Lai, Nicole C. H.
Li, Yolanda Y. T.
Jiang, Yuanbing
Zhong, Huan
Chen, Yuewen
Zhang, Yulin
Ma, Shuangshuang
Lo, Ronnie M. N.
Cheung, Kit
Tong, Estella P. S.
Ko, Ho
Shoai, Maryam
Mok, Kin Y.
Hardy, John
Mok, Vincent C. T.
Kwok, Timothy C. Y.
Fu, Amy K. Y.
Ip, Nancy Y.
author_sort Zhou, Xiaopu
collection PubMed
description INTRODUCTION: Dozens of Alzheimer's disease (AD)‐associated loci have been identified in European‐descent populations, but their effects have not been thoroughly investigated in the Hong Kong Chinese population. METHODS: TaqMan array genotyping was performed for known AD‐associated variants in a Hong Kong Chinese cohort. Regression analysis was conducted to study the associations of variants with AD‐associated traits and biomarkers. Lasso regression was applied to establish a polygenic risk score (PRS) model for AD risk prediction. RESULTS: SORL1 is associated with AD in the Hong Kong Chinese population. Meta‐analysis corroborates the AD‐protective effect of the SORL1 rs11218343 C allele. The PRS is developed and associated with AD risk, cognitive status, and AD‐related endophenotypes. TREM2 H157Y might influence the amyloid beta 42/40 ratio and levels of immune‐associated proteins in plasma. DISCUSSION: SORL1 is associated with AD in the Hong Kong Chinese population. The PRS model can predict AD risk and cognitive status in this population.
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spelling pubmed-74038352020-08-06 Genetic and polygenic risk score analysis for Alzheimer's disease in the Chinese population Zhou, Xiaopu Chen, Yu Ip, Fanny C. F. Lai, Nicole C. H. Li, Yolanda Y. T. Jiang, Yuanbing Zhong, Huan Chen, Yuewen Zhang, Yulin Ma, Shuangshuang Lo, Ronnie M. N. Cheung, Kit Tong, Estella P. S. Ko, Ho Shoai, Maryam Mok, Kin Y. Hardy, John Mok, Vincent C. T. Kwok, Timothy C. Y. Fu, Amy K. Y. Ip, Nancy Y. Alzheimers Dement (Amst) Genetics INTRODUCTION: Dozens of Alzheimer's disease (AD)‐associated loci have been identified in European‐descent populations, but their effects have not been thoroughly investigated in the Hong Kong Chinese population. METHODS: TaqMan array genotyping was performed for known AD‐associated variants in a Hong Kong Chinese cohort. Regression analysis was conducted to study the associations of variants with AD‐associated traits and biomarkers. Lasso regression was applied to establish a polygenic risk score (PRS) model for AD risk prediction. RESULTS: SORL1 is associated with AD in the Hong Kong Chinese population. Meta‐analysis corroborates the AD‐protective effect of the SORL1 rs11218343 C allele. The PRS is developed and associated with AD risk, cognitive status, and AD‐related endophenotypes. TREM2 H157Y might influence the amyloid beta 42/40 ratio and levels of immune‐associated proteins in plasma. DISCUSSION: SORL1 is associated with AD in the Hong Kong Chinese population. The PRS model can predict AD risk and cognitive status in this population. John Wiley and Sons Inc. 2020-08-05 /pmc/articles/PMC7403835/ /pubmed/32775599 http://dx.doi.org/10.1002/dad2.12074 Text en © 2020 The Authors. Alzheimer's & Dementia: Diagnosis, Assessment & Disease Monitoring published by Wiley Periodicals, Inc. on behalf of the Alzheimer's Association. This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.
spellingShingle Genetics
Zhou, Xiaopu
Chen, Yu
Ip, Fanny C. F.
Lai, Nicole C. H.
Li, Yolanda Y. T.
Jiang, Yuanbing
Zhong, Huan
Chen, Yuewen
Zhang, Yulin
Ma, Shuangshuang
Lo, Ronnie M. N.
Cheung, Kit
Tong, Estella P. S.
Ko, Ho
Shoai, Maryam
Mok, Kin Y.
Hardy, John
Mok, Vincent C. T.
Kwok, Timothy C. Y.
Fu, Amy K. Y.
Ip, Nancy Y.
Genetic and polygenic risk score analysis for Alzheimer's disease in the Chinese population
title Genetic and polygenic risk score analysis for Alzheimer's disease in the Chinese population
title_full Genetic and polygenic risk score analysis for Alzheimer's disease in the Chinese population
title_fullStr Genetic and polygenic risk score analysis for Alzheimer's disease in the Chinese population
title_full_unstemmed Genetic and polygenic risk score analysis for Alzheimer's disease in the Chinese population
title_short Genetic and polygenic risk score analysis for Alzheimer's disease in the Chinese population
title_sort genetic and polygenic risk score analysis for alzheimer's disease in the chinese population
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7403835/
https://www.ncbi.nlm.nih.gov/pubmed/32775599
http://dx.doi.org/10.1002/dad2.12074
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