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A simple and efficient Agrobacterium‐mediated transient expression system to dissect molecular processes in Brassica rapa and Brassica napus

The family Brassicaceae is a source of important crop species, including Brassica napus (oilseed rape), Brassica oleracea, and B. rapa, that is used globally for oil production or as a food source (e.g., pak choi or turnip). However, despite advances in recent years, including genome sequencing, a l...

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Autores principales: Mooney, Brian C., Graciet, Emmanuelle
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7403836/
https://www.ncbi.nlm.nih.gov/pubmed/32775949
http://dx.doi.org/10.1002/pld3.237
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author Mooney, Brian C.
Graciet, Emmanuelle
author_facet Mooney, Brian C.
Graciet, Emmanuelle
author_sort Mooney, Brian C.
collection PubMed
description The family Brassicaceae is a source of important crop species, including Brassica napus (oilseed rape), Brassica oleracea, and B. rapa, that is used globally for oil production or as a food source (e.g., pak choi or turnip). However, despite advances in recent years, including genome sequencing, a lack of established tools tailored to the study of Brassica crop species has impeded efforts to understand their molecular processes in greater detail. Here, we describe the use of a simple Agrobacterium‐mediated transient expression system adapted to B. rapa and B. napus that could facilitate study of molecular and biochemical events in these species. We also demonstrate the use of this method to characterize the N‐degron pathway of protein degradation in B. rapa. The N‐degron pathway is a subset of the ubiquitin‐proteasome system and represents a mechanism through which proteins may be targeted for degradation based on the identity of their N‐terminal amino acid residue. Interestingly, N‐degron‐mediated processes in plants have been implicated in the regulation of traits with potential agronomic importance, including the responses to pathogens and to abiotic stresses such as flooding tolerance. The stability of transiently expressed N‐degron reporter proteins in B. rapa indicates that its N‐degron pathway is highly conserved with that of Arabidopsis thaliana. These findings highlight the utility of Agrobacterium‐mediated transient expression in B. rapa and B. napus and establish a framework to investigate the N‐degron pathway and its roles in regulating agronomical traits in these species. SIGNIFICANCE STATEMENT: We describe an Agrobacterium‐mediated transient expression system applicable to Brassica crops and demonstrate its utility by identifying the destabilizing residues of the N‐degron pathway in B. rapa. As the N‐degron pathway functions as an integrator of environmental signals, this study could facilitate efforts to improve the robustness of Brassica crops.
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spelling pubmed-74038362020-08-06 A simple and efficient Agrobacterium‐mediated transient expression system to dissect molecular processes in Brassica rapa and Brassica napus Mooney, Brian C. Graciet, Emmanuelle Plant Direct Original Research The family Brassicaceae is a source of important crop species, including Brassica napus (oilseed rape), Brassica oleracea, and B. rapa, that is used globally for oil production or as a food source (e.g., pak choi or turnip). However, despite advances in recent years, including genome sequencing, a lack of established tools tailored to the study of Brassica crop species has impeded efforts to understand their molecular processes in greater detail. Here, we describe the use of a simple Agrobacterium‐mediated transient expression system adapted to B. rapa and B. napus that could facilitate study of molecular and biochemical events in these species. We also demonstrate the use of this method to characterize the N‐degron pathway of protein degradation in B. rapa. The N‐degron pathway is a subset of the ubiquitin‐proteasome system and represents a mechanism through which proteins may be targeted for degradation based on the identity of their N‐terminal amino acid residue. Interestingly, N‐degron‐mediated processes in plants have been implicated in the regulation of traits with potential agronomic importance, including the responses to pathogens and to abiotic stresses such as flooding tolerance. The stability of transiently expressed N‐degron reporter proteins in B. rapa indicates that its N‐degron pathway is highly conserved with that of Arabidopsis thaliana. These findings highlight the utility of Agrobacterium‐mediated transient expression in B. rapa and B. napus and establish a framework to investigate the N‐degron pathway and its roles in regulating agronomical traits in these species. SIGNIFICANCE STATEMENT: We describe an Agrobacterium‐mediated transient expression system applicable to Brassica crops and demonstrate its utility by identifying the destabilizing residues of the N‐degron pathway in B. rapa. As the N‐degron pathway functions as an integrator of environmental signals, this study could facilitate efforts to improve the robustness of Brassica crops. John Wiley and Sons Inc. 2020-07-06 /pmc/articles/PMC7403836/ /pubmed/32775949 http://dx.doi.org/10.1002/pld3.237 Text en © 2020 The Authors. Plant Direct published by American Society of Plant Biologists, Society for Experimental Biology and John Wiley & Sons Ltd This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Research
Mooney, Brian C.
Graciet, Emmanuelle
A simple and efficient Agrobacterium‐mediated transient expression system to dissect molecular processes in Brassica rapa and Brassica napus
title A simple and efficient Agrobacterium‐mediated transient expression system to dissect molecular processes in Brassica rapa and Brassica napus
title_full A simple and efficient Agrobacterium‐mediated transient expression system to dissect molecular processes in Brassica rapa and Brassica napus
title_fullStr A simple and efficient Agrobacterium‐mediated transient expression system to dissect molecular processes in Brassica rapa and Brassica napus
title_full_unstemmed A simple and efficient Agrobacterium‐mediated transient expression system to dissect molecular processes in Brassica rapa and Brassica napus
title_short A simple and efficient Agrobacterium‐mediated transient expression system to dissect molecular processes in Brassica rapa and Brassica napus
title_sort simple and efficient agrobacterium‐mediated transient expression system to dissect molecular processes in brassica rapa and brassica napus
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7403836/
https://www.ncbi.nlm.nih.gov/pubmed/32775949
http://dx.doi.org/10.1002/pld3.237
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