Cargando…

Significance of tumor mutation burden combined with immune infiltrates in the progression and prognosis of ovarian cancer

BACKGROUND: Ovarian cancer (OC) is the most malignant tumor in the female reproductive system. About 75% of OC in complete remission of clinical symptoms still develop a recurrence. Therefore, searching for new treatment methods plays an important role in improving the prognosis of OC. METHODS: We d...

Descripción completa

Detalles Bibliográficos
Autores principales: Bi, Fangfang, Chen, Ying, Yang, Qing
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7405355/
https://www.ncbi.nlm.nih.gov/pubmed/32774167
http://dx.doi.org/10.1186/s12935-020-01472-9
_version_ 1783567236847370240
author Bi, Fangfang
Chen, Ying
Yang, Qing
author_facet Bi, Fangfang
Chen, Ying
Yang, Qing
author_sort Bi, Fangfang
collection PubMed
description BACKGROUND: Ovarian cancer (OC) is the most malignant tumor in the female reproductive system. About 75% of OC in complete remission of clinical symptoms still develop a recurrence. Therefore, searching for new treatment methods plays an important role in improving the prognosis of OC. METHODS: We downloaded the MAF files, RNA-seq data and clinical information from the TCGA database. The “maftools” package in R software was used to visualize the OC mutation data. We calculated the tumor mutation burden (TMB) of OC and analyzed its correlation with clinicopathological parameters and prognostic value. Tumor mutation burden related signature model was constructed to predict the overall survival (OS) of OC. RESULTS: The results revealed that there was a statistical correlation between TMB and FIGO stage, grade and tumor residual size of ovarian cancer patients. The Kaplan–Meier curve indicated that a high TMB is associated with better clinical outcomes of OC. The difference analysis indicated 24 upregulated genes and 619 downregulated genes in the high-TMB group compared with the low-TMB group. Besides, the TMBRS model based on five hub genes (RBMS3, PLA2G5, CDH2, AMHR2 and ADAMTS8) was constructed to predict the OS of OC. The ROC curve and validation data sets all revealed that the TMBRS model was reliable in predicting recurrence risk. Immune microenvironment analysis indicated the correlations between TMB and infiltrating immune cells. CONCLUSIONS: Our results suggest that TMB plays an important role in the prognosis and guiding immunotherapy of OC. By detecting the TMB of OC, clinicians can more accurately treat patients with immunotherapy, thereby improving their survival rate.
format Online
Article
Text
id pubmed-7405355
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher BioMed Central
record_format MEDLINE/PubMed
spelling pubmed-74053552020-08-07 Significance of tumor mutation burden combined with immune infiltrates in the progression and prognosis of ovarian cancer Bi, Fangfang Chen, Ying Yang, Qing Cancer Cell Int Primary Research BACKGROUND: Ovarian cancer (OC) is the most malignant tumor in the female reproductive system. About 75% of OC in complete remission of clinical symptoms still develop a recurrence. Therefore, searching for new treatment methods plays an important role in improving the prognosis of OC. METHODS: We downloaded the MAF files, RNA-seq data and clinical information from the TCGA database. The “maftools” package in R software was used to visualize the OC mutation data. We calculated the tumor mutation burden (TMB) of OC and analyzed its correlation with clinicopathological parameters and prognostic value. Tumor mutation burden related signature model was constructed to predict the overall survival (OS) of OC. RESULTS: The results revealed that there was a statistical correlation between TMB and FIGO stage, grade and tumor residual size of ovarian cancer patients. The Kaplan–Meier curve indicated that a high TMB is associated with better clinical outcomes of OC. The difference analysis indicated 24 upregulated genes and 619 downregulated genes in the high-TMB group compared with the low-TMB group. Besides, the TMBRS model based on five hub genes (RBMS3, PLA2G5, CDH2, AMHR2 and ADAMTS8) was constructed to predict the OS of OC. The ROC curve and validation data sets all revealed that the TMBRS model was reliable in predicting recurrence risk. Immune microenvironment analysis indicated the correlations between TMB and infiltrating immune cells. CONCLUSIONS: Our results suggest that TMB plays an important role in the prognosis and guiding immunotherapy of OC. By detecting the TMB of OC, clinicians can more accurately treat patients with immunotherapy, thereby improving their survival rate. BioMed Central 2020-08-05 /pmc/articles/PMC7405355/ /pubmed/32774167 http://dx.doi.org/10.1186/s12935-020-01472-9 Text en © The Author(s) 2020 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Primary Research
Bi, Fangfang
Chen, Ying
Yang, Qing
Significance of tumor mutation burden combined with immune infiltrates in the progression and prognosis of ovarian cancer
title Significance of tumor mutation burden combined with immune infiltrates in the progression and prognosis of ovarian cancer
title_full Significance of tumor mutation burden combined with immune infiltrates in the progression and prognosis of ovarian cancer
title_fullStr Significance of tumor mutation burden combined with immune infiltrates in the progression and prognosis of ovarian cancer
title_full_unstemmed Significance of tumor mutation burden combined with immune infiltrates in the progression and prognosis of ovarian cancer
title_short Significance of tumor mutation burden combined with immune infiltrates in the progression and prognosis of ovarian cancer
title_sort significance of tumor mutation burden combined with immune infiltrates in the progression and prognosis of ovarian cancer
topic Primary Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7405355/
https://www.ncbi.nlm.nih.gov/pubmed/32774167
http://dx.doi.org/10.1186/s12935-020-01472-9
work_keys_str_mv AT bifangfang significanceoftumormutationburdencombinedwithimmuneinfiltratesintheprogressionandprognosisofovariancancer
AT chenying significanceoftumormutationburdencombinedwithimmuneinfiltratesintheprogressionandprognosisofovariancancer
AT yangqing significanceoftumormutationburdencombinedwithimmuneinfiltratesintheprogressionandprognosisofovariancancer