Cargando…

T3SEpp: an Integrated Prediction Pipeline for Bacterial Type III Secreted Effectors

Many Gram-negative bacteria infect hosts and cause diseases by translocating a variety of type III secreted effectors (T3SEs) into the host cell cytoplasm. However, despite a dramatic increase in the number of available whole-genome sequences, it remains challenging for accurate prediction of T3SEs....

Descripción completa

Detalles Bibliográficos
Autores principales:	Hui, Xinjie, Chen, Zewei, Lin, Mingxiong, Zhang, Junya, Hu, Yueming, Zeng, Yingying, Cheng, Xi, Ou-Yang, Le, Sun, Ming-an, White, Aaron P., Wang, Yejun
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	American Society for Microbiology 2020
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7406222/ https://www.ncbi.nlm.nih.gov/pubmed/32753503 http://dx.doi.org/10.1128/mSystems.00288-20

Ejemplares similares

Computational prediction of secreted proteins in gram-negative bacteria
por: Hui, Xinjie, et al.
Publicado: (2021)

T1SEstacker: A Tri-Layer Stacking Model Effectively Predicts Bacterial Type 1 Secreted Proteins Based on C-Terminal Non-repeats-in-Toxin-Motif Sequence Features
por: Chen, Zewei, et al.
Publicado: (2022)

T3_MM: A Markov Model Effectively Classifies Bacterial Type III Secretion Signals
por: Wang, Yejun, et al.
Publicado: (2013)

Prediction of bacterial type IV secreted effectors by C-terminal features
por: Wang, Yejun, et al.
Publicado: (2014)

The selenium content of SEPP1 versus selenium requirements in vertebrates
por: Penglase, Sam, et al.
Publicado: (2015)

T3SEdb: data warehousing of virulence effectors secreted by the bacterial Type III Secretion System
por: Tay, Daniel Ming Ming, et al.
Publicado: (2010)

T3DB: an integrated database for bacterial type III secretion system
por: Wang, Yejun, et al.
Publicado: (2012)

Effective Identification of Bacterial Type III Secretion Signals Using Joint Element Features
por: Wang, Yejun, et al.
Publicado: (2013)

The bacterial type III-secreted protein AvrRps4 is a bipartite effector
por: Halane, Morgan K., et al.
Publicado: (2018)

Prévention du COVID-19 en entreprise : expérience d’un SEPP belge
por: Muller, Michel, et al.
Publicado: (2022)

Yersinia type III secretion: send in the effectors
por: Cornelis, Guy R.
Publicado: (2002)

Suppression of type III effector secretion by polymers
por: Ohgita, Takashi, et al.
Publicado: (2013)

SecretEPDB: a comprehensive web-based resource for secreted effector proteins of the bacterial types III, IV and VI secretion systems
por: An, Yi, et al.
Publicado: (2017)

Bacterial type III secretion systems: a complex device for the delivery of bacterial effector proteins into eukaryotic host cells
por: Wagner, Samuel, et al.
Publicado: (2018)

Bordetella Type III Secretion Injectosome and Effector Proteins
por: Kamanova, Jana
Publicado: (2020)

Bacterial secreted effectors and caspase-3 interactions
por: Wall, Daniel M, et al.
Publicado: (2014)

ACNNT3: Attention-CNN Framework for Prediction of Sequence-Based Bacterial Type III Secreted Effectors
por: Li, Jie, et al.
Publicado: (2020)

The Association Between Selenium, Selenoprotein P (SEPP1), Fluid Intelligence, and Exercise in the UK Biobank Cohort
por: Lehrer, Steven, et al.
Publicado: (2022)

Type III Secretion Effectors with Arginine N-Glycosyltransferase Activity
por: Araujo-Garrido, Juan Luis, et al.
Publicado: (2020)

Exploitation of Eukaryotic Ubiquitin Signaling Pathways by Effectors Translocated by Bacterial Type III and Type IV Secretion Systems
por: Angot, Aurélie, et al.
Publicado: (2007)

What the Wild Things Do: Mechanisms of Plant Host Manipulation by Bacterial Type III-Secreted Effector Proteins
por: Schreiber, Karl J., et al.
Publicado: (2021)

An Experimental Pipeline for Initial Characterization of Bacterial Type III Secretion System Inhibitor Mode of Action Using Enteropathogenic Yersinia
por: Morgan, Jessica M., et al.
Publicado: (2018)

Using Weakly Conserved Motifs Hidden in Secretion Signals to Identify Type-III Effectors from Bacterial Pathogen Genomes
por: Dong, Xiaobao, et al.
Publicado: (2013)

Effective Identification of Gram-Negative Bacterial Type III Secreted Effectors Using Position-Specific Residue Conservation Profiles
por: Yang, Xiaojiao, et al.
Publicado: (2013)

Molecular Evolution of Pseudomonas syringae Type III Secreted Effector Proteins
por: Dillon, Marcus M., et al.
Publicado: (2019)

Engineering Agrobacterium tumefaciens with a Type III Secretion System to Express Type III Effectors
por: Raman, Vidhyavathi, et al.
Publicado: (2023)

Establishment of an inducing medium for type III effector secretion in Xanthomonas campestris pv. campestris
por: Jiang, Guo-Feng, et al.
Publicado: (2014)

Lawsonia intracellularis LI0666 is a new EPIYA effector exported by the Yersinia enterocolitica type III secretion system
por: Chen, Cang, et al.
Publicado: (2022)

iT3SE-PX: Identification of Bacterial Type III Secreted Effectors Using PSSM Profiles and XGBoost Feature Selection
por: Ding, Chenchen, et al.
Publicado: (2021)

Analysis of the Expression, Secretion and Translocation of the Salmonella enterica Type III Secretion System Effector SteA
por: Cardenal-Muñoz, Elena, et al.
Publicado: (2011)

The transmembrane domains of the type III secretion system effector Tir are involved in its secretion and cellular activities
por: Braverman, Dor, et al.
Publicado: (2023)

Imaging Type-III Secretion reveals dynamics and spatial segregation of Salmonella effectors
por: VanEngelenburg, Schuyler B., et al.
Publicado: (2010)

Regulation of Effector Delivery by Type III Secretion Chaperone Proteins in Erwinia amylovora
por: Castiblanco, Luisa F., et al.
Publicado: (2018)

Advances and Challenges in Studying Type III Secretion Effectors of Attaching and Effacing Pathogens
por: Slater, Sabrina L., et al.
Publicado: (2020)

Natural language processing approach to model the secretion signal of type III effectors
por: Wagner, Naama, et al.
Publicado: (2022)

Caspase-3 cleavage of Salmonella type III secreted effector protein SifA is required for localization of functional domains and bacterial dissemination
por: Patel, Samir, et al.
Publicado: (2019)

DeepT3_4: A Hybrid Deep Neural Network Model for the Distinction Between Bacterial Type III and IV Secreted Effectors
por: Yu, Lezheng, et al.
Publicado: (2021)

SEPP1 Influences Breast Cancer Risk among Women with Greater Native American Ancestry: The Breast Cancer Health Disparities Study
por: Pellatt, Andrew J., et al.
Publicado: (2013)

Exendin-4 Inhibits the Expression of SEPP1 and Fetuin-A via Improvement of Palmitic Acid-Induced Endoplasmic Reticulum Stress by AMPK
por: Lee, Jinmi, et al.
Publicado: (2015)

SEPP1 gene variants and abdominal aortic aneurysm: gene association in relation to metabolic risk factors and peripheral arterial disease coexistence
por: Strauss, Ewa, et al.
Publicado: (2014)

Cannot write session to /tmp/vufind_sessions/sess_3r84jpde02pth22l8l7cqkv02g