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A Novel High Glucose-Tolerant β-Glucosidase: Targeted Computational Approach for Metagenomic Screening
The rate-limiting component of cellulase for efficient degradation of lignocellulosic biomass through the enzymatic route depends on glucosidase’s sensitivity to the end product (glucose). Therefore, there is still a keen interest in finding glucose-tolerant β-glucosidase (BGL) that is active at hig...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7406677/ https://www.ncbi.nlm.nih.gov/pubmed/32850705 http://dx.doi.org/10.3389/fbioe.2020.00813 |
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author | Ariaeenejad, Shohreh Nooshi-Nedamani, Safura Rahban, Mahdie Kavousi, Kaveh Pirbalooti, Atefeh Ghasemi Mirghaderi, SeyedSoheil Mohammadi, Mahsa Mirzaei, Mehdi Salekdeh, Ghasem Hosseini |
author_facet | Ariaeenejad, Shohreh Nooshi-Nedamani, Safura Rahban, Mahdie Kavousi, Kaveh Pirbalooti, Atefeh Ghasemi Mirghaderi, SeyedSoheil Mohammadi, Mahsa Mirzaei, Mehdi Salekdeh, Ghasem Hosseini |
author_sort | Ariaeenejad, Shohreh |
collection | PubMed |
description | The rate-limiting component of cellulase for efficient degradation of lignocellulosic biomass through the enzymatic route depends on glucosidase’s sensitivity to the end product (glucose). Therefore, there is still a keen interest in finding glucose-tolerant β-glucosidase (BGL) that is active at high glucose concentrations. The main objective of this study was to identify, isolate, and characterize novel highly glucose-tolerant and halotolerant β-glucosidase gene (PersiBGL1) from the mixed genome DNA of sheep rumen metagenome as a suitable environment for efficient cellulase by computationally guided experiments instead of costly functional screening. At first, an in silico screening approach was utilized to find primary candidate enzymes with superior properties. The structure-dependent mechanism of glucose tolerance was investigated for candidate enzymes. Among the computationally selected candidates, PersiBGL1 was cloned, isolated, and structurally characterized, which achieved very high activity in relatively high temperatures and alkaline pH and was successfully used for the hydrolysis of cellobiose. This enzyme exhibits a very high glucose tolerance, with the highest inhibition constant K(i) (8.8 M) among BGLs reported so far and retained 75% of its initial activity in the presence of 10 M glucose. Furthermore, a group of multivalent metal, including Mg(2+), Mn(2+), and Ca(2+), as a cofactor, could improve the catalytic efficiency of PersiBGL1. Our results demonstrated the power of computational selected candidates to discover novel glucose tolerance BGL, effective for the bioconversion of lignocellulosic biomass. |
format | Online Article Text |
id | pubmed-7406677 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-74066772020-08-25 A Novel High Glucose-Tolerant β-Glucosidase: Targeted Computational Approach for Metagenomic Screening Ariaeenejad, Shohreh Nooshi-Nedamani, Safura Rahban, Mahdie Kavousi, Kaveh Pirbalooti, Atefeh Ghasemi Mirghaderi, SeyedSoheil Mohammadi, Mahsa Mirzaei, Mehdi Salekdeh, Ghasem Hosseini Front Bioeng Biotechnol Bioengineering and Biotechnology The rate-limiting component of cellulase for efficient degradation of lignocellulosic biomass through the enzymatic route depends on glucosidase’s sensitivity to the end product (glucose). Therefore, there is still a keen interest in finding glucose-tolerant β-glucosidase (BGL) that is active at high glucose concentrations. The main objective of this study was to identify, isolate, and characterize novel highly glucose-tolerant and halotolerant β-glucosidase gene (PersiBGL1) from the mixed genome DNA of sheep rumen metagenome as a suitable environment for efficient cellulase by computationally guided experiments instead of costly functional screening. At first, an in silico screening approach was utilized to find primary candidate enzymes with superior properties. The structure-dependent mechanism of glucose tolerance was investigated for candidate enzymes. Among the computationally selected candidates, PersiBGL1 was cloned, isolated, and structurally characterized, which achieved very high activity in relatively high temperatures and alkaline pH and was successfully used for the hydrolysis of cellobiose. This enzyme exhibits a very high glucose tolerance, with the highest inhibition constant K(i) (8.8 M) among BGLs reported so far and retained 75% of its initial activity in the presence of 10 M glucose. Furthermore, a group of multivalent metal, including Mg(2+), Mn(2+), and Ca(2+), as a cofactor, could improve the catalytic efficiency of PersiBGL1. Our results demonstrated the power of computational selected candidates to discover novel glucose tolerance BGL, effective for the bioconversion of lignocellulosic biomass. Frontiers Media S.A. 2020-07-30 /pmc/articles/PMC7406677/ /pubmed/32850705 http://dx.doi.org/10.3389/fbioe.2020.00813 Text en Copyright © 2020 Ariaeenejad, Nooshi-Nedamani, Rahban, Kavousi, Pirbalooti, Mirghaderi, Mohammadi, Mirzaei and Salekdeh. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Bioengineering and Biotechnology Ariaeenejad, Shohreh Nooshi-Nedamani, Safura Rahban, Mahdie Kavousi, Kaveh Pirbalooti, Atefeh Ghasemi Mirghaderi, SeyedSoheil Mohammadi, Mahsa Mirzaei, Mehdi Salekdeh, Ghasem Hosseini A Novel High Glucose-Tolerant β-Glucosidase: Targeted Computational Approach for Metagenomic Screening |
title | A Novel High Glucose-Tolerant β-Glucosidase: Targeted Computational Approach for Metagenomic Screening |
title_full | A Novel High Glucose-Tolerant β-Glucosidase: Targeted Computational Approach for Metagenomic Screening |
title_fullStr | A Novel High Glucose-Tolerant β-Glucosidase: Targeted Computational Approach for Metagenomic Screening |
title_full_unstemmed | A Novel High Glucose-Tolerant β-Glucosidase: Targeted Computational Approach for Metagenomic Screening |
title_short | A Novel High Glucose-Tolerant β-Glucosidase: Targeted Computational Approach for Metagenomic Screening |
title_sort | novel high glucose-tolerant β-glucosidase: targeted computational approach for metagenomic screening |
topic | Bioengineering and Biotechnology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7406677/ https://www.ncbi.nlm.nih.gov/pubmed/32850705 http://dx.doi.org/10.3389/fbioe.2020.00813 |
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