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De Novo Genome Assemblies for Three North American Bumble Bee Species: Bombus bifarius, Bombus vancouverensis, and Bombus vosnesenskii

Bumble bees are ecologically and economically important insect pollinators. Three abundant and widespread species in western North America, Bombus bifarius, Bombus vancouverensis, and Bombus vosnesenskii, have been the focus of substantial research relating to diverse aspects of bumble bee ecology a...

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Autores principales: Heraghty, Sam D., Sutton, John M., Pimsler, Meaghan L., Fierst, Janna L., Strange, James P., Lozier, Jeffrey D.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Genetics Society of America 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7407468/
https://www.ncbi.nlm.nih.gov/pubmed/32586847
http://dx.doi.org/10.1534/g3.120.401437
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author Heraghty, Sam D.
Sutton, John M.
Pimsler, Meaghan L.
Fierst, Janna L.
Strange, James P.
Lozier, Jeffrey D.
author_facet Heraghty, Sam D.
Sutton, John M.
Pimsler, Meaghan L.
Fierst, Janna L.
Strange, James P.
Lozier, Jeffrey D.
author_sort Heraghty, Sam D.
collection PubMed
description Bumble bees are ecologically and economically important insect pollinators. Three abundant and widespread species in western North America, Bombus bifarius, Bombus vancouverensis, and Bombus vosnesenskii, have been the focus of substantial research relating to diverse aspects of bumble bee ecology and evolutionary biology. We present de novo genome assemblies for each of the three species using hybrid assembly of Illumina and Oxford Nanopore Technologies sequences. All three assemblies are of high quality with large N50s (> 2.2 Mb), BUSCO scores indicating > 98% complete genes, and annotations producing 13,325 – 13,687 genes, comparing favorably with other bee genomes. Analysis of synteny against the most complete bumble bee genome, Bombus terrestris, reveals a high degree of collinearity. These genomes should provide a valuable resource for addressing questions relating to functional genomics and evolutionary biology in these species.
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spelling pubmed-74074682020-08-19 De Novo Genome Assemblies for Three North American Bumble Bee Species: Bombus bifarius, Bombus vancouverensis, and Bombus vosnesenskii Heraghty, Sam D. Sutton, John M. Pimsler, Meaghan L. Fierst, Janna L. Strange, James P. Lozier, Jeffrey D. G3 (Bethesda) Genome Report Bumble bees are ecologically and economically important insect pollinators. Three abundant and widespread species in western North America, Bombus bifarius, Bombus vancouverensis, and Bombus vosnesenskii, have been the focus of substantial research relating to diverse aspects of bumble bee ecology and evolutionary biology. We present de novo genome assemblies for each of the three species using hybrid assembly of Illumina and Oxford Nanopore Technologies sequences. All three assemblies are of high quality with large N50s (> 2.2 Mb), BUSCO scores indicating > 98% complete genes, and annotations producing 13,325 – 13,687 genes, comparing favorably with other bee genomes. Analysis of synteny against the most complete bumble bee genome, Bombus terrestris, reveals a high degree of collinearity. These genomes should provide a valuable resource for addressing questions relating to functional genomics and evolutionary biology in these species. Genetics Society of America 2020-06-25 /pmc/articles/PMC7407468/ /pubmed/32586847 http://dx.doi.org/10.1534/g3.120.401437 Text en Copyright © 2020 Heraghty et al. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Genome Report
Heraghty, Sam D.
Sutton, John M.
Pimsler, Meaghan L.
Fierst, Janna L.
Strange, James P.
Lozier, Jeffrey D.
De Novo Genome Assemblies for Three North American Bumble Bee Species: Bombus bifarius, Bombus vancouverensis, and Bombus vosnesenskii
title De Novo Genome Assemblies for Three North American Bumble Bee Species: Bombus bifarius, Bombus vancouverensis, and Bombus vosnesenskii
title_full De Novo Genome Assemblies for Three North American Bumble Bee Species: Bombus bifarius, Bombus vancouverensis, and Bombus vosnesenskii
title_fullStr De Novo Genome Assemblies for Three North American Bumble Bee Species: Bombus bifarius, Bombus vancouverensis, and Bombus vosnesenskii
title_full_unstemmed De Novo Genome Assemblies for Three North American Bumble Bee Species: Bombus bifarius, Bombus vancouverensis, and Bombus vosnesenskii
title_short De Novo Genome Assemblies for Three North American Bumble Bee Species: Bombus bifarius, Bombus vancouverensis, and Bombus vosnesenskii
title_sort de novo genome assemblies for three north american bumble bee species: bombus bifarius, bombus vancouverensis, and bombus vosnesenskii
topic Genome Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7407468/
https://www.ncbi.nlm.nih.gov/pubmed/32586847
http://dx.doi.org/10.1534/g3.120.401437
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