Cargando…

hcapca: Automated Hierarchical Clustering and Principal Component Analysis of Large Metabolomic Datasets in R

Microbial natural product discovery programs face two main challenges today: rapidly prioritizing strains for discovering new molecules and avoiding the rediscovery of already known molecules. Typically, these problems have been tackled using biological assays to identify promising strains and techn...

Descripción completa

Detalles Bibliográficos
Autores principales:	Chanana, Shaurya, Thomas, Chris S., Zhang, Fan, Rajski, Scott R., Bugni, Tim S.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	MDPI 2020
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7407629/ https://www.ncbi.nlm.nih.gov/pubmed/32708222 http://dx.doi.org/10.3390/metabo10070297

Ejemplares similares

Natural Product Discovery Using Planes of Principal Component Analysis in R (PoPCAR)
por: Chanana, Shaurya, et al.
Publicado: (2017)

Draft Genome Sequence of Pseudenhygromyxa sp. Strain WMMC2535, a Marine Ascidian-Associated Bacterium
por: Chanana, Shaurya, et al.
Publicado: (2020)

CLUSFAVOR 5.0: hierarchical cluster and principal-component analysis of microarray-based transcriptional profiles
por: Peterson, Leif E
Publicado: (2002)

Microglia Morphological Categorization in a Rat Model of Neuroinflammation by Hierarchical Cluster and Principal Components Analysis
por: Fernández-Arjona, María del Mar, et al.
Publicado: (2017)

Pattern Recognition for Steam Flooding Field Applications Based on Hierarchical Clustering and Principal Component Analysis
por: Zhang, Na, et al.
Publicado: (2022)

Quantification of Compatibility Between Polymeric Excipients and Atenolol Using Principal Component Analysis and Hierarchical Cluster Analysis
por: Rojek, Barbara, et al.
Publicado: (2021)

Probabilistic principal component analysis for metabolomic data
por: Nyamundanda, Gift, et al.
Publicado: (2010)

Hierarchical association of COPD to principal genetic components of biological systems
por: Carlin, Daniel E., et al.
Publicado: (2023)

Determination of bioactive components in the fruits of Cercis chinensis Bunge by HPLC-MS/MS and quality evaluation by principal components and hierarchical cluster analyses
por: Hong, Yuan, et al.
Publicado: (2021)

Brackish habitat dictates cultivable Actinobacterial diversity from marine sponges
por: Ellis, Gregory A., et al.
Publicado: (2017)

SEM-EDS investigation on PM10 data collected in Central Italy: Principal Component Analysis and Hierarchical Cluster Analysis
por: Genga, Alessandra, et al.
Publicado: (2012)

Enhypyrazinones A and B, Pyrazinone Natural Products from a Marine-Derived Myxobacterium Enhygromyxa sp.
por: Zhang, Fan, et al.
Publicado: (2019)

Study of large and highly stratified population datasets by combining iterative pruning principal component analysis and structure
por: Limpiti, Tulaya, et al.
Publicado: (2011)

Principal Components and Hierarchical Cluster Analyses of Trace Metals and Total Hydrocarbons in Gills, Intestines and Muscles of Clarias gariepinus (Burchell, 1822)
por: Isibor, Patrick Omoregie, et al.
Publicado: (2020)

Exploring patterns enriched in a dataset with contrastive principal component analysis
por: Abid, Abubakar, et al.
Publicado: (2018)

Pyridine-2,6-Dithiocarboxylic Acid and Its Metal Complexes: New Inhibitors of New Delhi Metallo β-Lactamase-1
por: Thomas, Chris S., et al.
Publicado: (2020)

Using principal component analysis to reduce complex datasets produced by robotic technology in healthy participants
por: Wood, Michael D., et al.
Publicado: (2018)

Principal Components and Cluster Analysis of Trace Elements in Buckwheat Flour
por: Zhao, Mengyu, et al.
Publicado: (2023)

Applying a hierarchical clustering on principal components approach to identify different patterns of the SARS-CoV-2 epidemic across Italian regions
por: Maugeri, Andrea, et al.
Publicado: (2021)

OS-PCA: Orthogonal Smoothed Principal Component Analysis Applied to Metabolome Data
por: Yamamoto, Hiroyuki, et al.
Publicado: (2021)

Omics Technologies to Understand Activation of a Biosynthetic Gene Cluster in Micromonospora sp. WMMB235: Deciphering Keyicin Biosynthesis
por: Acharya, Deepa, et al.
Publicado: (2019)

Draft Genome Sequence of Micromonospora sp. Strain WMMA1996, a Marine Sponge-Associated Bacterium
por: Braun, Doug R., et al.
Publicado: (2018)

Principal component analysis of blood microRNA datasets facilitates diagnosis of diverse diseases
por: Sell, Stacy L., et al.
Publicado: (2020)

HisCoM-PCA: software for hierarchical structural component analysis for pathway analysis based using principal component analysis
por: Jiang, Nan, et al.
Publicado: (2020)

Principal Component Geostatistical Approach for large-dimensional inverse problems
por: Kitanidis, P K, et al.
Publicado: (2014)

Generating clustered journal maps: an automated system for hierarchical classification
por: Leydesdorff, Loet, et al.
Publicado: (2017)

Principal component analysis
por: Gray, Virginia
Publicado: (2017)

Principal component analysis
por: Jolliffe, I T
Publicado: (1986)

Principal component analysis
por: Jolliffe, I T
Publicado: (2002)

Multiblock metabolomics: An approach to elucidate whole-body metabolism with multiblock principal component analysis
por: Tanabe, Kazuhiro, et al.
Publicado: (2021)

EdNet: A Large-Scale Hierarchical Dataset in Education
por: Choi, Youngduck, et al.
Publicado: (2020)

A distinction between Fritillaria Cirrhosa Bulbus and Fritillaria Pallidiflora Bulbus via LC–MS/MS in conjunction with principal component analysis and hierarchical cluster analysis
por: Liu, Chuanlan, et al.
Publicado: (2023)

Diagnosis of sudden cardiac arrest using principal component analysis in automated external defibrillators
por: Pham, Van-Su, et al.
Publicado: (2023)

Large scale hierarchical clustering of protein sequences
por: Krause, Antje, et al.
Publicado: (2005)

Clustering and principal-components approach based on heritability for mapping multiple gene expressions
por: Wang, Yuanjia, et al.
Publicado: (2007)

Cluster and Principal Component Analysis of Human Glioblastoma Multiforme (GBM) Tumor Proteome
por: Pooladi, Mehdi, et al.
Publicado: (2014)

Predicting the Prognosis of Multiple System Atrophy Using Cluster and Principal Component Analysis
por: Du, Juanjuan, et al.
Publicado: (2023)

Complete Genome Sequence of Dietzia sp. Strain WMMA184, a Marine Coral-Associated Bacterium
por: Braun, Doug R., et al.
Publicado: (2018)

Nutritional Components of Millet Porridge Cooked by Different Electric Cookers Based on Principal Component and Cluster Analyses
por: Zhang, Jiali, et al.
Publicado: (2022)

Fast Principal Component Analysis of Large-Scale Genome-Wide Data
por: Abraham, Gad, et al.
Publicado: (2014)

Cannot write session to /tmp/vufind_sessions/sess_4jnqd3t4nej31thhjg8o8mhdf0