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Application of Multiblock Analysis on Small Metabolomic Multi-Tissue Dataset
Data integration has been proven to provide valuable information. The information extracted using data integration in the form of multiblock analysis can pinpoint both common and unique trends in the different blocks. When working with small multiblock datasets the number of possible integration met...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7407932/ https://www.ncbi.nlm.nih.gov/pubmed/32709053 http://dx.doi.org/10.3390/metabo10070295 |
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author | Torell, Frida Skotare, Tomas Trygg, Johan |
author_facet | Torell, Frida Skotare, Tomas Trygg, Johan |
author_sort | Torell, Frida |
collection | PubMed |
description | Data integration has been proven to provide valuable information. The information extracted using data integration in the form of multiblock analysis can pinpoint both common and unique trends in the different blocks. When working with small multiblock datasets the number of possible integration methods is drastically reduced. To investigate the application of multiblock analysis in cases where one has a few number of samples and a lack of statistical power, we studied a small metabolomic multiblock dataset containing six blocks (i.e., tissue types), only including common metabolites. We used a single model multiblock analysis method called the joint and unique multiblock analysis (JUMBA) and compared it to a commonly used method, concatenated principal component analysis (PCA). These methods were used to detect trends in the dataset and identify underlying factors responsible for metabolic variations. Using JUMBA, we were able to interpret the extracted components and link them to relevant biological properties. JUMBA shows how the observations are related to one another, the stability of these relationships, and to what extent each of the blocks contribute to the components. These results indicate that multiblock methods can be useful even with a small number of samples. |
format | Online Article Text |
id | pubmed-7407932 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-74079322020-08-12 Application of Multiblock Analysis on Small Metabolomic Multi-Tissue Dataset Torell, Frida Skotare, Tomas Trygg, Johan Metabolites Article Data integration has been proven to provide valuable information. The information extracted using data integration in the form of multiblock analysis can pinpoint both common and unique trends in the different blocks. When working with small multiblock datasets the number of possible integration methods is drastically reduced. To investigate the application of multiblock analysis in cases where one has a few number of samples and a lack of statistical power, we studied a small metabolomic multiblock dataset containing six blocks (i.e., tissue types), only including common metabolites. We used a single model multiblock analysis method called the joint and unique multiblock analysis (JUMBA) and compared it to a commonly used method, concatenated principal component analysis (PCA). These methods were used to detect trends in the dataset and identify underlying factors responsible for metabolic variations. Using JUMBA, we were able to interpret the extracted components and link them to relevant biological properties. JUMBA shows how the observations are related to one another, the stability of these relationships, and to what extent each of the blocks contribute to the components. These results indicate that multiblock methods can be useful even with a small number of samples. MDPI 2020-07-17 /pmc/articles/PMC7407932/ /pubmed/32709053 http://dx.doi.org/10.3390/metabo10070295 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Torell, Frida Skotare, Tomas Trygg, Johan Application of Multiblock Analysis on Small Metabolomic Multi-Tissue Dataset |
title | Application of Multiblock Analysis on Small Metabolomic Multi-Tissue Dataset |
title_full | Application of Multiblock Analysis on Small Metabolomic Multi-Tissue Dataset |
title_fullStr | Application of Multiblock Analysis on Small Metabolomic Multi-Tissue Dataset |
title_full_unstemmed | Application of Multiblock Analysis on Small Metabolomic Multi-Tissue Dataset |
title_short | Application of Multiblock Analysis on Small Metabolomic Multi-Tissue Dataset |
title_sort | application of multiblock analysis on small metabolomic multi-tissue dataset |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7407932/ https://www.ncbi.nlm.nih.gov/pubmed/32709053 http://dx.doi.org/10.3390/metabo10070295 |
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