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Application of Multiblock Analysis on Small Metabolomic Multi-Tissue Dataset

Data integration has been proven to provide valuable information. The information extracted using data integration in the form of multiblock analysis can pinpoint both common and unique trends in the different blocks. When working with small multiblock datasets the number of possible integration met...

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Detalles Bibliográficos
Autores principales: Torell, Frida, Skotare, Tomas, Trygg, Johan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7407932/
https://www.ncbi.nlm.nih.gov/pubmed/32709053
http://dx.doi.org/10.3390/metabo10070295
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author Torell, Frida
Skotare, Tomas
Trygg, Johan
author_facet Torell, Frida
Skotare, Tomas
Trygg, Johan
author_sort Torell, Frida
collection PubMed
description Data integration has been proven to provide valuable information. The information extracted using data integration in the form of multiblock analysis can pinpoint both common and unique trends in the different blocks. When working with small multiblock datasets the number of possible integration methods is drastically reduced. To investigate the application of multiblock analysis in cases where one has a few number of samples and a lack of statistical power, we studied a small metabolomic multiblock dataset containing six blocks (i.e., tissue types), only including common metabolites. We used a single model multiblock analysis method called the joint and unique multiblock analysis (JUMBA) and compared it to a commonly used method, concatenated principal component analysis (PCA). These methods were used to detect trends in the dataset and identify underlying factors responsible for metabolic variations. Using JUMBA, we were able to interpret the extracted components and link them to relevant biological properties. JUMBA shows how the observations are related to one another, the stability of these relationships, and to what extent each of the blocks contribute to the components. These results indicate that multiblock methods can be useful even with a small number of samples.
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spelling pubmed-74079322020-08-12 Application of Multiblock Analysis on Small Metabolomic Multi-Tissue Dataset Torell, Frida Skotare, Tomas Trygg, Johan Metabolites Article Data integration has been proven to provide valuable information. The information extracted using data integration in the form of multiblock analysis can pinpoint both common and unique trends in the different blocks. When working with small multiblock datasets the number of possible integration methods is drastically reduced. To investigate the application of multiblock analysis in cases where one has a few number of samples and a lack of statistical power, we studied a small metabolomic multiblock dataset containing six blocks (i.e., tissue types), only including common metabolites. We used a single model multiblock analysis method called the joint and unique multiblock analysis (JUMBA) and compared it to a commonly used method, concatenated principal component analysis (PCA). These methods were used to detect trends in the dataset and identify underlying factors responsible for metabolic variations. Using JUMBA, we were able to interpret the extracted components and link them to relevant biological properties. JUMBA shows how the observations are related to one another, the stability of these relationships, and to what extent each of the blocks contribute to the components. These results indicate that multiblock methods can be useful even with a small number of samples. MDPI 2020-07-17 /pmc/articles/PMC7407932/ /pubmed/32709053 http://dx.doi.org/10.3390/metabo10070295 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Torell, Frida
Skotare, Tomas
Trygg, Johan
Application of Multiblock Analysis on Small Metabolomic Multi-Tissue Dataset
title Application of Multiblock Analysis on Small Metabolomic Multi-Tissue Dataset
title_full Application of Multiblock Analysis on Small Metabolomic Multi-Tissue Dataset
title_fullStr Application of Multiblock Analysis on Small Metabolomic Multi-Tissue Dataset
title_full_unstemmed Application of Multiblock Analysis on Small Metabolomic Multi-Tissue Dataset
title_short Application of Multiblock Analysis on Small Metabolomic Multi-Tissue Dataset
title_sort application of multiblock analysis on small metabolomic multi-tissue dataset
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7407932/
https://www.ncbi.nlm.nih.gov/pubmed/32709053
http://dx.doi.org/10.3390/metabo10070295
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