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Identification of Novel microRNA Prognostic Markers Using Cascaded Wx, a Neural Network-Based Framework, in Lung Adenocarcinoma Patients

The evolution of next-generation sequencing technology has resulted in a generation of large amounts of cancer genomic data. Therefore, increasingly complex techniques are required to appropriately analyze this data in order to determine its clinical relevance. In this study, we applied a neural net...

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Autores principales: Kim, Jeong Seon, Chun, Sang Hoon, Park, Sungsoo, Lee, Sieun, Kim, Sae Eun, Hong, Ji Hyung, Kang, Keunsoo, Ko, Yoon Ho, Ahn, Young-Ho
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7409139/
https://www.ncbi.nlm.nih.gov/pubmed/32674274
http://dx.doi.org/10.3390/cancers12071890
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author Kim, Jeong Seon
Chun, Sang Hoon
Park, Sungsoo
Lee, Sieun
Kim, Sae Eun
Hong, Ji Hyung
Kang, Keunsoo
Ko, Yoon Ho
Ahn, Young-Ho
author_facet Kim, Jeong Seon
Chun, Sang Hoon
Park, Sungsoo
Lee, Sieun
Kim, Sae Eun
Hong, Ji Hyung
Kang, Keunsoo
Ko, Yoon Ho
Ahn, Young-Ho
author_sort Kim, Jeong Seon
collection PubMed
description The evolution of next-generation sequencing technology has resulted in a generation of large amounts of cancer genomic data. Therefore, increasingly complex techniques are required to appropriately analyze this data in order to determine its clinical relevance. In this study, we applied a neural network-based technique to analyze data from The Cancer Genome Atlas and extract useful microRNA (miRNA) features for predicting the prognosis of patients with lung adenocarcinomas (LUAD). Using the Cascaded Wx platform, we identified and ranked miRNAs that affected LUAD patient survival and selected the two top-ranked miRNAs (miR-374a and miR-374b) for measurement of their expression levels in patient tumor tissues and in lung cancer cells exhibiting an altered epithelial-to-mesenchymal transition (EMT) status. Analysis of miRNA expression from tumor samples revealed that high miR-374a/b expression was associated with poor patient survival rates. In lung cancer cells, the EMT signal induced miR-374a/b expression, which, in turn, promoted EMT and invasiveness. These findings demonstrated that this approach enabled effective identification and validation of prognostic miRNA markers in LUAD, suggesting its potential efficacy for clinical use.
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spelling pubmed-74091392020-08-26 Identification of Novel microRNA Prognostic Markers Using Cascaded Wx, a Neural Network-Based Framework, in Lung Adenocarcinoma Patients Kim, Jeong Seon Chun, Sang Hoon Park, Sungsoo Lee, Sieun Kim, Sae Eun Hong, Ji Hyung Kang, Keunsoo Ko, Yoon Ho Ahn, Young-Ho Cancers (Basel) Article The evolution of next-generation sequencing technology has resulted in a generation of large amounts of cancer genomic data. Therefore, increasingly complex techniques are required to appropriately analyze this data in order to determine its clinical relevance. In this study, we applied a neural network-based technique to analyze data from The Cancer Genome Atlas and extract useful microRNA (miRNA) features for predicting the prognosis of patients with lung adenocarcinomas (LUAD). Using the Cascaded Wx platform, we identified and ranked miRNAs that affected LUAD patient survival and selected the two top-ranked miRNAs (miR-374a and miR-374b) for measurement of their expression levels in patient tumor tissues and in lung cancer cells exhibiting an altered epithelial-to-mesenchymal transition (EMT) status. Analysis of miRNA expression from tumor samples revealed that high miR-374a/b expression was associated with poor patient survival rates. In lung cancer cells, the EMT signal induced miR-374a/b expression, which, in turn, promoted EMT and invasiveness. These findings demonstrated that this approach enabled effective identification and validation of prognostic miRNA markers in LUAD, suggesting its potential efficacy for clinical use. MDPI 2020-07-14 /pmc/articles/PMC7409139/ /pubmed/32674274 http://dx.doi.org/10.3390/cancers12071890 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Kim, Jeong Seon
Chun, Sang Hoon
Park, Sungsoo
Lee, Sieun
Kim, Sae Eun
Hong, Ji Hyung
Kang, Keunsoo
Ko, Yoon Ho
Ahn, Young-Ho
Identification of Novel microRNA Prognostic Markers Using Cascaded Wx, a Neural Network-Based Framework, in Lung Adenocarcinoma Patients
title Identification of Novel microRNA Prognostic Markers Using Cascaded Wx, a Neural Network-Based Framework, in Lung Adenocarcinoma Patients
title_full Identification of Novel microRNA Prognostic Markers Using Cascaded Wx, a Neural Network-Based Framework, in Lung Adenocarcinoma Patients
title_fullStr Identification of Novel microRNA Prognostic Markers Using Cascaded Wx, a Neural Network-Based Framework, in Lung Adenocarcinoma Patients
title_full_unstemmed Identification of Novel microRNA Prognostic Markers Using Cascaded Wx, a Neural Network-Based Framework, in Lung Adenocarcinoma Patients
title_short Identification of Novel microRNA Prognostic Markers Using Cascaded Wx, a Neural Network-Based Framework, in Lung Adenocarcinoma Patients
title_sort identification of novel microrna prognostic markers using cascaded wx, a neural network-based framework, in lung adenocarcinoma patients
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7409139/
https://www.ncbi.nlm.nih.gov/pubmed/32674274
http://dx.doi.org/10.3390/cancers12071890
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