Cargando…

A New Method for Counting Reproductive Structures in Digitized Herbarium Specimens Using Mask R-CNN

Phenology—the timing of life-history events—is a key trait for understanding responses of organisms to climate. The digitization and online mobilization of herbarium specimens is rapidly advancing our understanding of plant phenological response to climate and climatic change. The current practice o...

Descripción completa

Detalles Bibliográficos
Autores principales:	Davis, Charles C., Champ, Julien, Park, Daniel S., Breckheimer, Ian, Lyra, Goia M., Xie, Junxi, Joly, Alexis, Tarapore, Dharmesh, Ellison, Aaron M., Bonnet, Pierre
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Frontiers Media S.A. 2020
Materias:	Plant Science
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7411132/ https://www.ncbi.nlm.nih.gov/pubmed/32849691 http://dx.doi.org/10.3389/fpls.2020.01129

Ejemplares similares

Going deeper in the automated identification of Herbarium specimens
por: Carranza-Rojas, Jose, et al.
Publicado: (2017)

A new fine‐grained method for automated visual analysis of herbarium specimens: A case study for phenological data extraction
por: Goëau, Hervé, et al.
Publicado: (2020)

Machine Learning Undercounts Reproductive Organs on Herbarium Specimens but Accurately Derives Their Quantitative Phenological Status: A Case Study of Streptanthus tortuosus
por: Love, Natalie L. R., et al.
Publicado: (2021)

Machine Learning Using Digitized Herbarium Specimens to Advance Phenological Research
por: Pearson, Katelin D, et al.
Publicado: (2020)

Digitization protocol for scoring reproductive phenology from herbarium specimens of seed plants
por: Yost, Jennifer M., et al.
Publicado: (2018)

Increasing the efficiency of digitization workflows for herbarium specimens
por: Tulig, Melissa, et al.
Publicado: (2012)

Computer vision applied to herbarium specimens of German trees: testing the future utility of the millions of herbarium specimen images for automated identification
por: Unger, Jakob, et al.
Publicado: (2016)

Continental‐scale metagenomics, BLAST searches, and herbarium specimens: The Australian Microbiome Initiative and the National Herbarium of Victoria
por: Davoodian, Naveed, et al.
Publicado: (2020)

The use and misuse of herbarium specimens in evaluating plant extinction risks
por: Nic Lughadha, Eimear, et al.
Publicado: (2019)

Generating segmentation masks of herbarium specimens and a data set for training segmentation models using deep learning
por: White, Alexander E., et al.
Publicado: (2020)

Toward a large‐scale and deep phenological stage annotation of herbarium specimens: Case studies from temperate, tropical, and equatorial floras
por: Lorieul, Titouan, et al.
Publicado: (2019)

Genome skimming herbarium specimens for DNA barcoding and phylogenomics
por: Zeng, Chun-Xia, et al.
Publicado: (2018)

Utilizing herbarium specimens to quantify historical mycorrhizal communities
por: Heberling, J. Mason, et al.
Publicado: (2019)

Dataset of herbarium specimens of threatened vascular plants in Catalonia
por: Nualart, Neus, et al.
Publicado: (2017)

Biases in estimation of insect herbivory from herbarium specimens
por: Kozlov, Mikhail V., et al.
Publicado: (2020)

When xylarium and herbarium meet: linking Tervuren xylarium wood samples with their herbarium specimens at Meise Botanic Garden
por: Vanden Abeele, Samuel, et al.
Publicado: (2021)

Phenology models using herbarium specimens are only slightly improved by using finer‐scale stages of reproduction
por: Ellwood, Elizabeth R., et al.
Publicado: (2019)

Can Artificial Intelligence Help in the Study of Vegetative Growth Patterns from Herbarium Collections? An Evaluation of the Tropical Flora of the French Guiana Forest
por: Goëau, Hervé, et al.
Publicado: (2022)

Computerized catalogue of herbarium specimens of Salix in the southeastern United States /
por: Argus, George W.
Publicado: (1985)

A non-destructive DNA sampling technique for herbarium specimens
por: Shepherd, Lara D.
Publicado: (2017)

A linear sequence to facilitate curation of herbarium specimens of Annonaceae
por: Chatrou, Lars W., et al.
Publicado: (2018)

Integrating herbarium specimen observations into global phenology data systems
por: Brenskelle, Laura, et al.
Publicado: (2019)

A benchmark dataset of herbarium specimen images with label data
por: Dillen, Mathias, et al.
Publicado: (2019)

An algorithm competition for automatic species identification from herbarium specimens
por: Little, Damon P., et al.
Publicado: (2020)

Alien flora of Zimbabwe: Data derived from herbarium specimens
por: Alfred, Maroyi
Publicado: (2022)

Estimating herbarium specimen digitization rates: Accounting for human experience
por: Powell, Caleb, et al.
Publicado: (2021)

Use of globally unique identifiers (GUIDs) to link herbarium specimen records to physical specimens
por: Nelson, Gil, et al.
Publicado: (2018)

The use of Optical Character Recognition (OCR) in the digitisation of herbarium specimen labels
por: Drinkwater, Robyn E., et al.
Publicado: (2014)

Patterns and biases in an Arctic herbarium specimen collection: Implications for phenological research
por: Panchen, Zoe A., et al.
Publicado: (2019)

Prediction of Lime Tolerance in Rhododendron Based on Herbarium Specimen and Geochemical Data
por: Wang, Shusheng, et al.
Publicado: (2018)

Development of a system for the automated identification of herbarium specimens with high accuracy
por: Shirai, Masato, et al.
Publicado: (2022)

Ancient DNA extraction methods for herbarium specimens: When is it worth the effort?
por: Marinček, Pia, et al.
Publicado: (2022)

X-ray fluorescence spectroscopy (XRF) for metallome analysis of herbarium specimens
por: Purwadi, Imam, et al.
Publicado: (2022)

How to Open the Treasure Chest? Optimising DNA Extraction from Herbarium Specimens
por: Särkinen, Tiina, et al.
Publicado: (2012)

Genomic Treasure Troves: Complete Genome Sequencing of Herbarium and Insect Museum Specimens
por: Staats, Martijn, et al.
Publicado: (2013)

Catalogue of type specimens of fungi and lichens deposited in the Herbarium of the University of Granada (Spain)
por: Vizoso, M. Teresa, et al.
Publicado: (2015)

A new method and insights for estimating phenological events from herbarium specimens
por: Pearson, Katelin D.
Publicado: (2019)

A Target Capture-Based Method to Estimate Ploidy From Herbarium Specimens
por: Viruel, Juan, et al.
Publicado: (2019)

Automated Extraction of Phenotypic Leaf Traits of Individual Intact Herbarium Leaves from Herbarium Specimen Images Using Deep Learning Based Semantic Segmentation
por: Hussein, Burhan Rashid, et al.
Publicado: (2021)

Estimating Compositions and Nutritional Values of Seed Mixes Based on Vision Transformers
por: Mehreen, Shamprikta, et al.
Publicado: (2023)

Cannot write session to /tmp/vufind_sessions/sess_hk6qemsvb19av718plqege1f92