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Repetitive elements as a transcriptomic marker of aging: Evidence in multiple datasets and models
Transcriptomic markers of aging can be useful for studying age‐related processes and diseases. However, noncoding repetitive element (RE) transcripts, which may play an important role in aging, are commonly overlooked in transcriptome studies—and their potential as a transcriptomic marker of aging h...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7412685/ https://www.ncbi.nlm.nih.gov/pubmed/32500641 http://dx.doi.org/10.1111/acel.13167 |
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author | LaRocca, Thomas J. Cavalier, Alyssa N. Wahl, Devin |
author_facet | LaRocca, Thomas J. Cavalier, Alyssa N. Wahl, Devin |
author_sort | LaRocca, Thomas J. |
collection | PubMed |
description | Transcriptomic markers of aging can be useful for studying age‐related processes and diseases. However, noncoding repetitive element (RE) transcripts, which may play an important role in aging, are commonly overlooked in transcriptome studies—and their potential as a transcriptomic marker of aging has not been evaluated. Here, we used multiple RNA‐seq datasets generated from human samples and Caenorhabditis elegans and found that most RE transcripts (a) accumulate progressively with aging; (b) can be used to accurately predict age; and (c) may be a good marker of biological age. The strong RE/aging correlations we observed are consistent with growing evidence that RE transcripts contribute directly to aging and disease. |
format | Online Article Text |
id | pubmed-7412685 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-74126852020-08-10 Repetitive elements as a transcriptomic marker of aging: Evidence in multiple datasets and models LaRocca, Thomas J. Cavalier, Alyssa N. Wahl, Devin Aging Cell Short Take Transcriptomic markers of aging can be useful for studying age‐related processes and diseases. However, noncoding repetitive element (RE) transcripts, which may play an important role in aging, are commonly overlooked in transcriptome studies—and their potential as a transcriptomic marker of aging has not been evaluated. Here, we used multiple RNA‐seq datasets generated from human samples and Caenorhabditis elegans and found that most RE transcripts (a) accumulate progressively with aging; (b) can be used to accurately predict age; and (c) may be a good marker of biological age. The strong RE/aging correlations we observed are consistent with growing evidence that RE transcripts contribute directly to aging and disease. John Wiley and Sons Inc. 2020-06-05 2020-07 /pmc/articles/PMC7412685/ /pubmed/32500641 http://dx.doi.org/10.1111/acel.13167 Text en © 2020 The Authors. Aging Cell published by the Anatomical Society and John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Short Take LaRocca, Thomas J. Cavalier, Alyssa N. Wahl, Devin Repetitive elements as a transcriptomic marker of aging: Evidence in multiple datasets and models |
title | Repetitive elements as a transcriptomic marker of aging: Evidence in multiple datasets and models |
title_full | Repetitive elements as a transcriptomic marker of aging: Evidence in multiple datasets and models |
title_fullStr | Repetitive elements as a transcriptomic marker of aging: Evidence in multiple datasets and models |
title_full_unstemmed | Repetitive elements as a transcriptomic marker of aging: Evidence in multiple datasets and models |
title_short | Repetitive elements as a transcriptomic marker of aging: Evidence in multiple datasets and models |
title_sort | repetitive elements as a transcriptomic marker of aging: evidence in multiple datasets and models |
topic | Short Take |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7412685/ https://www.ncbi.nlm.nih.gov/pubmed/32500641 http://dx.doi.org/10.1111/acel.13167 |
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