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Wheat ear counting using K-means clustering segmentation and convolutional neural network

BACKGROUND: Wheat yield is influenced by the number of ears per unit area, and manual counting has traditionally been used to estimate wheat yield. To realize rapid and accurate wheat ear counting, K-means clustering was used for the automatic segmentation of wheat ear images captured by hand-held d...

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Autores principales: Xu, Xin, Li, Haiyang, Yin, Fei, Xi, Lei, Qiao, Hongbo, Ma, Zhaowu, Shen, Shuaijie, Jiang, Binchao, Ma, Xinming
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7412807/
https://www.ncbi.nlm.nih.gov/pubmed/32782453
http://dx.doi.org/10.1186/s13007-020-00648-8
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author Xu, Xin
Li, Haiyang
Yin, Fei
Xi, Lei
Qiao, Hongbo
Ma, Zhaowu
Shen, Shuaijie
Jiang, Binchao
Ma, Xinming
author_facet Xu, Xin
Li, Haiyang
Yin, Fei
Xi, Lei
Qiao, Hongbo
Ma, Zhaowu
Shen, Shuaijie
Jiang, Binchao
Ma, Xinming
author_sort Xu, Xin
collection PubMed
description BACKGROUND: Wheat yield is influenced by the number of ears per unit area, and manual counting has traditionally been used to estimate wheat yield. To realize rapid and accurate wheat ear counting, K-means clustering was used for the automatic segmentation of wheat ear images captured by hand-held devices. The segmented data set was constructed by creating four categories of image labels: non-wheat ear, one wheat ear, two wheat ears, and three wheat ears, which was then was sent into the convolution neural network (CNN) model for training and testing to reduce the complexity of the model. RESULTS: The recognition accuracy of non-wheat, one wheat, two wheat ears, and three wheat ears were 99.8, 97.5, 98.07, and 98.5%, respectively. The model R(2) reached 0.96, the root mean square error (RMSE) was 10.84 ears, the macro F1-score and micro F1-score both achieved 98.47%, and the best performance was observed during late grain-filling stage (R(2) = 0.99, RMSE = 3.24 ears). The model could also be applied to the UAV platform (R(2) = 0.97, RMSE = 9.47 ears). CONCLUSIONS: The classification of segmented images as opposed to target recognition not only reduces the workload of manual annotation but also improves significantly the efficiency and accuracy of wheat ear counting, thus meeting the requirements of wheat yield estimation in the field environment.
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spelling pubmed-74128072020-08-10 Wheat ear counting using K-means clustering segmentation and convolutional neural network Xu, Xin Li, Haiyang Yin, Fei Xi, Lei Qiao, Hongbo Ma, Zhaowu Shen, Shuaijie Jiang, Binchao Ma, Xinming Plant Methods Research BACKGROUND: Wheat yield is influenced by the number of ears per unit area, and manual counting has traditionally been used to estimate wheat yield. To realize rapid and accurate wheat ear counting, K-means clustering was used for the automatic segmentation of wheat ear images captured by hand-held devices. The segmented data set was constructed by creating four categories of image labels: non-wheat ear, one wheat ear, two wheat ears, and three wheat ears, which was then was sent into the convolution neural network (CNN) model for training and testing to reduce the complexity of the model. RESULTS: The recognition accuracy of non-wheat, one wheat, two wheat ears, and three wheat ears were 99.8, 97.5, 98.07, and 98.5%, respectively. The model R(2) reached 0.96, the root mean square error (RMSE) was 10.84 ears, the macro F1-score and micro F1-score both achieved 98.47%, and the best performance was observed during late grain-filling stage (R(2) = 0.99, RMSE = 3.24 ears). The model could also be applied to the UAV platform (R(2) = 0.97, RMSE = 9.47 ears). CONCLUSIONS: The classification of segmented images as opposed to target recognition not only reduces the workload of manual annotation but also improves significantly the efficiency and accuracy of wheat ear counting, thus meeting the requirements of wheat yield estimation in the field environment. BioMed Central 2020-08-06 /pmc/articles/PMC7412807/ /pubmed/32782453 http://dx.doi.org/10.1186/s13007-020-00648-8 Text en © The Author(s) 2020 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research
Xu, Xin
Li, Haiyang
Yin, Fei
Xi, Lei
Qiao, Hongbo
Ma, Zhaowu
Shen, Shuaijie
Jiang, Binchao
Ma, Xinming
Wheat ear counting using K-means clustering segmentation and convolutional neural network
title Wheat ear counting using K-means clustering segmentation and convolutional neural network
title_full Wheat ear counting using K-means clustering segmentation and convolutional neural network
title_fullStr Wheat ear counting using K-means clustering segmentation and convolutional neural network
title_full_unstemmed Wheat ear counting using K-means clustering segmentation and convolutional neural network
title_short Wheat ear counting using K-means clustering segmentation and convolutional neural network
title_sort wheat ear counting using k-means clustering segmentation and convolutional neural network
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7412807/
https://www.ncbi.nlm.nih.gov/pubmed/32782453
http://dx.doi.org/10.1186/s13007-020-00648-8
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