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Pathological lung segmentation based on random forest combined with deep model and multi-scale superpixels

Accurate segmentation of lungs in pathological thoracic computed tomography (CT) scans plays an important role in pulmonary disease diagnosis. However, it is still a challenging task due to the variability of pathological lung appearances and shapes. In this paper, we proposed a novel segmentation a...

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Autores principales: Liu, Caixia, Zhao, Ruibin, Xie, Wangli, Pang, Mingyong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer US 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7413019/
https://www.ncbi.nlm.nih.gov/pubmed/32837245
http://dx.doi.org/10.1007/s11063-020-10330-8
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author Liu, Caixia
Zhao, Ruibin
Xie, Wangli
Pang, Mingyong
author_facet Liu, Caixia
Zhao, Ruibin
Xie, Wangli
Pang, Mingyong
author_sort Liu, Caixia
collection PubMed
description Accurate segmentation of lungs in pathological thoracic computed tomography (CT) scans plays an important role in pulmonary disease diagnosis. However, it is still a challenging task due to the variability of pathological lung appearances and shapes. In this paper, we proposed a novel segmentation algorithm based on random forest (RF), deep convolutional network, and multi-scale superpixels for segmenting pathological lungs from thoracic CT images accurately. A pathological thoracic CT image is first segmented based on multi-scale superpixels, and deep features, texture, and intensity features extracted from superpixels are taken as inputs of a group of RF classifiers. With the fusion of classification results of RFs by a fractional-order gray correlation approach, we capture an initial segmentation of pathological lungs. We finally utilize a divide-and-conquer strategy to deal with segmentation refinement combining contour correction of left lungs and region repairing of right lungs. Our algorithm is tested on a group of thoracic CT images affected with interstitial lung diseases. Experiments show that our algorithm can achieve a high segmentation accuracy with an average DSC of 96.45% and PPV of 95.07%. Compared with several existing lung segmentation methods, our algorithm exhibits a robust performance on pathological lung segmentation. Our algorithm can be employed reliably for lung field segmentation of pathologic thoracic CT images with a high accuracy, which is helpful to assist radiologists to detect the presence of pulmonary diseases and quantify its shape and size in regular clinical practices.
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spelling pubmed-74130192020-08-10 Pathological lung segmentation based on random forest combined with deep model and multi-scale superpixels Liu, Caixia Zhao, Ruibin Xie, Wangli Pang, Mingyong Neural Process Lett Article Accurate segmentation of lungs in pathological thoracic computed tomography (CT) scans plays an important role in pulmonary disease diagnosis. However, it is still a challenging task due to the variability of pathological lung appearances and shapes. In this paper, we proposed a novel segmentation algorithm based on random forest (RF), deep convolutional network, and multi-scale superpixels for segmenting pathological lungs from thoracic CT images accurately. A pathological thoracic CT image is first segmented based on multi-scale superpixels, and deep features, texture, and intensity features extracted from superpixels are taken as inputs of a group of RF classifiers. With the fusion of classification results of RFs by a fractional-order gray correlation approach, we capture an initial segmentation of pathological lungs. We finally utilize a divide-and-conquer strategy to deal with segmentation refinement combining contour correction of left lungs and region repairing of right lungs. Our algorithm is tested on a group of thoracic CT images affected with interstitial lung diseases. Experiments show that our algorithm can achieve a high segmentation accuracy with an average DSC of 96.45% and PPV of 95.07%. Compared with several existing lung segmentation methods, our algorithm exhibits a robust performance on pathological lung segmentation. Our algorithm can be employed reliably for lung field segmentation of pathologic thoracic CT images with a high accuracy, which is helpful to assist radiologists to detect the presence of pulmonary diseases and quantify its shape and size in regular clinical practices. Springer US 2020-08-07 2020 /pmc/articles/PMC7413019/ /pubmed/32837245 http://dx.doi.org/10.1007/s11063-020-10330-8 Text en © Springer Science+Business Media, LLC, part of Springer Nature 2020 This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.
spellingShingle Article
Liu, Caixia
Zhao, Ruibin
Xie, Wangli
Pang, Mingyong
Pathological lung segmentation based on random forest combined with deep model and multi-scale superpixels
title Pathological lung segmentation based on random forest combined with deep model and multi-scale superpixels
title_full Pathological lung segmentation based on random forest combined with deep model and multi-scale superpixels
title_fullStr Pathological lung segmentation based on random forest combined with deep model and multi-scale superpixels
title_full_unstemmed Pathological lung segmentation based on random forest combined with deep model and multi-scale superpixels
title_short Pathological lung segmentation based on random forest combined with deep model and multi-scale superpixels
title_sort pathological lung segmentation based on random forest combined with deep model and multi-scale superpixels
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7413019/
https://www.ncbi.nlm.nih.gov/pubmed/32837245
http://dx.doi.org/10.1007/s11063-020-10330-8
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