Cargando…

Genetic heterogeneity and prognostic impact of recurrent ANK2 and TP53 mutations in mantle cell lymphoma: a multi-centre cohort study

The molecular features of mantle cell lymphoma (MCL), including its increased incidence, and complex therapies have not been investigated in detail, particularly in East Asian populations. In this study, we performed targeted panel sequencing (TPS) and whole-exome sequencing (WES) to investigate the...

Descripción completa

Detalles Bibliográficos
Autores principales: Jeong, Seri, Park, Yu Jin, Yun, Woobin, Lee, Seung-Tae, Choi, Jong Rak, Suh, Cheolwon, Jo, Jae-Cheol, Cha, Hee Jeong, Jeong, Jee-Yeong, Chang, HeeKyung, Cha, Yoon Jin, Kim, Hyerim, Park, Min-Jeong, Song, Wonkeun, Cho, Eun-Hae, Jeong, Eun-Goo, Lee, Junnam, Park, Yongmin, Lee, Yong Seok, Kim, Da Jung, Lee, Ho Sup
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7414214/
https://www.ncbi.nlm.nih.gov/pubmed/32770099
http://dx.doi.org/10.1038/s41598-020-70310-9
_version_ 1783568929471332352
author Jeong, Seri
Park, Yu Jin
Yun, Woobin
Lee, Seung-Tae
Choi, Jong Rak
Suh, Cheolwon
Jo, Jae-Cheol
Cha, Hee Jeong
Jeong, Jee-Yeong
Chang, HeeKyung
Cha, Yoon Jin
Kim, Hyerim
Park, Min-Jeong
Song, Wonkeun
Cho, Eun-Hae
Jeong, Eun-Goo
Lee, Junnam
Park, Yongmin
Lee, Yong Seok
Kim, Da Jung
Lee, Ho Sup
author_facet Jeong, Seri
Park, Yu Jin
Yun, Woobin
Lee, Seung-Tae
Choi, Jong Rak
Suh, Cheolwon
Jo, Jae-Cheol
Cha, Hee Jeong
Jeong, Jee-Yeong
Chang, HeeKyung
Cha, Yoon Jin
Kim, Hyerim
Park, Min-Jeong
Song, Wonkeun
Cho, Eun-Hae
Jeong, Eun-Goo
Lee, Junnam
Park, Yongmin
Lee, Yong Seok
Kim, Da Jung
Lee, Ho Sup
author_sort Jeong, Seri
collection PubMed
description The molecular features of mantle cell lymphoma (MCL), including its increased incidence, and complex therapies have not been investigated in detail, particularly in East Asian populations. In this study, we performed targeted panel sequencing (TPS) and whole-exome sequencing (WES) to investigate the genetic alterations in Korean MCL patients. We obtained a total of 53 samples from MCL patients from five Korean university hospitals between 2009 and 2016. We identified the recurrently mutated genes such as SYNE1, ATM, KMT2D, CARD11, ANK2, KMT2C, and TP53, which included some known drivers of MCL. The mutational profiles of our cohort indicated genetic heterogeneity. The significantly enriched pathways were mainly involved in gene expression, cell cycle, and programmed cell death. Multivariate analysis revealed that ANK2 mutations impacted the unfavourable overall survival (hazard ratio [HR] 3.126; P = 0.032). Furthermore, TP53 mutations were related to worse progression-free survival (HR 7.813; P = 0.043). Among the recurrently mutated genes with more than 15.0% frequency, discrepancies were found in only 5 genes from 4 patients, suggesting comparability of the TPS to WES in practical laboratory settings. We provide the unbiased genetic landscape that might contribute to MCL pathogenesis and recurrent genes conferring unfavourable outcomes.
format Online
Article
Text
id pubmed-7414214
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-74142142020-08-11 Genetic heterogeneity and prognostic impact of recurrent ANK2 and TP53 mutations in mantle cell lymphoma: a multi-centre cohort study Jeong, Seri Park, Yu Jin Yun, Woobin Lee, Seung-Tae Choi, Jong Rak Suh, Cheolwon Jo, Jae-Cheol Cha, Hee Jeong Jeong, Jee-Yeong Chang, HeeKyung Cha, Yoon Jin Kim, Hyerim Park, Min-Jeong Song, Wonkeun Cho, Eun-Hae Jeong, Eun-Goo Lee, Junnam Park, Yongmin Lee, Yong Seok Kim, Da Jung Lee, Ho Sup Sci Rep Article The molecular features of mantle cell lymphoma (MCL), including its increased incidence, and complex therapies have not been investigated in detail, particularly in East Asian populations. In this study, we performed targeted panel sequencing (TPS) and whole-exome sequencing (WES) to investigate the genetic alterations in Korean MCL patients. We obtained a total of 53 samples from MCL patients from five Korean university hospitals between 2009 and 2016. We identified the recurrently mutated genes such as SYNE1, ATM, KMT2D, CARD11, ANK2, KMT2C, and TP53, which included some known drivers of MCL. The mutational profiles of our cohort indicated genetic heterogeneity. The significantly enriched pathways were mainly involved in gene expression, cell cycle, and programmed cell death. Multivariate analysis revealed that ANK2 mutations impacted the unfavourable overall survival (hazard ratio [HR] 3.126; P = 0.032). Furthermore, TP53 mutations were related to worse progression-free survival (HR 7.813; P = 0.043). Among the recurrently mutated genes with more than 15.0% frequency, discrepancies were found in only 5 genes from 4 patients, suggesting comparability of the TPS to WES in practical laboratory settings. We provide the unbiased genetic landscape that might contribute to MCL pathogenesis and recurrent genes conferring unfavourable outcomes. Nature Publishing Group UK 2020-08-07 /pmc/articles/PMC7414214/ /pubmed/32770099 http://dx.doi.org/10.1038/s41598-020-70310-9 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Jeong, Seri
Park, Yu Jin
Yun, Woobin
Lee, Seung-Tae
Choi, Jong Rak
Suh, Cheolwon
Jo, Jae-Cheol
Cha, Hee Jeong
Jeong, Jee-Yeong
Chang, HeeKyung
Cha, Yoon Jin
Kim, Hyerim
Park, Min-Jeong
Song, Wonkeun
Cho, Eun-Hae
Jeong, Eun-Goo
Lee, Junnam
Park, Yongmin
Lee, Yong Seok
Kim, Da Jung
Lee, Ho Sup
Genetic heterogeneity and prognostic impact of recurrent ANK2 and TP53 mutations in mantle cell lymphoma: a multi-centre cohort study
title Genetic heterogeneity and prognostic impact of recurrent ANK2 and TP53 mutations in mantle cell lymphoma: a multi-centre cohort study
title_full Genetic heterogeneity and prognostic impact of recurrent ANK2 and TP53 mutations in mantle cell lymphoma: a multi-centre cohort study
title_fullStr Genetic heterogeneity and prognostic impact of recurrent ANK2 and TP53 mutations in mantle cell lymphoma: a multi-centre cohort study
title_full_unstemmed Genetic heterogeneity and prognostic impact of recurrent ANK2 and TP53 mutations in mantle cell lymphoma: a multi-centre cohort study
title_short Genetic heterogeneity and prognostic impact of recurrent ANK2 and TP53 mutations in mantle cell lymphoma: a multi-centre cohort study
title_sort genetic heterogeneity and prognostic impact of recurrent ank2 and tp53 mutations in mantle cell lymphoma: a multi-centre cohort study
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7414214/
https://www.ncbi.nlm.nih.gov/pubmed/32770099
http://dx.doi.org/10.1038/s41598-020-70310-9
work_keys_str_mv AT jeongseri geneticheterogeneityandprognosticimpactofrecurrentank2andtp53mutationsinmantlecelllymphomaamulticentrecohortstudy
AT parkyujin geneticheterogeneityandprognosticimpactofrecurrentank2andtp53mutationsinmantlecelllymphomaamulticentrecohortstudy
AT yunwoobin geneticheterogeneityandprognosticimpactofrecurrentank2andtp53mutationsinmantlecelllymphomaamulticentrecohortstudy
AT leeseungtae geneticheterogeneityandprognosticimpactofrecurrentank2andtp53mutationsinmantlecelllymphomaamulticentrecohortstudy
AT choijongrak geneticheterogeneityandprognosticimpactofrecurrentank2andtp53mutationsinmantlecelllymphomaamulticentrecohortstudy
AT suhcheolwon geneticheterogeneityandprognosticimpactofrecurrentank2andtp53mutationsinmantlecelllymphomaamulticentrecohortstudy
AT jojaecheol geneticheterogeneityandprognosticimpactofrecurrentank2andtp53mutationsinmantlecelllymphomaamulticentrecohortstudy
AT chaheejeong geneticheterogeneityandprognosticimpactofrecurrentank2andtp53mutationsinmantlecelllymphomaamulticentrecohortstudy
AT jeongjeeyeong geneticheterogeneityandprognosticimpactofrecurrentank2andtp53mutationsinmantlecelllymphomaamulticentrecohortstudy
AT changheekyung geneticheterogeneityandprognosticimpactofrecurrentank2andtp53mutationsinmantlecelllymphomaamulticentrecohortstudy
AT chayoonjin geneticheterogeneityandprognosticimpactofrecurrentank2andtp53mutationsinmantlecelllymphomaamulticentrecohortstudy
AT kimhyerim geneticheterogeneityandprognosticimpactofrecurrentank2andtp53mutationsinmantlecelllymphomaamulticentrecohortstudy
AT parkminjeong geneticheterogeneityandprognosticimpactofrecurrentank2andtp53mutationsinmantlecelllymphomaamulticentrecohortstudy
AT songwonkeun geneticheterogeneityandprognosticimpactofrecurrentank2andtp53mutationsinmantlecelllymphomaamulticentrecohortstudy
AT choeunhae geneticheterogeneityandprognosticimpactofrecurrentank2andtp53mutationsinmantlecelllymphomaamulticentrecohortstudy
AT jeongeungoo geneticheterogeneityandprognosticimpactofrecurrentank2andtp53mutationsinmantlecelllymphomaamulticentrecohortstudy
AT leejunnam geneticheterogeneityandprognosticimpactofrecurrentank2andtp53mutationsinmantlecelllymphomaamulticentrecohortstudy
AT parkyongmin geneticheterogeneityandprognosticimpactofrecurrentank2andtp53mutationsinmantlecelllymphomaamulticentrecohortstudy
AT leeyongseok geneticheterogeneityandprognosticimpactofrecurrentank2andtp53mutationsinmantlecelllymphomaamulticentrecohortstudy
AT kimdajung geneticheterogeneityandprognosticimpactofrecurrentank2andtp53mutationsinmantlecelllymphomaamulticentrecohortstudy
AT leehosup geneticheterogeneityandprognosticimpactofrecurrentank2andtp53mutationsinmantlecelllymphomaamulticentrecohortstudy