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Construction of a novel prognostic-predicting model correlated to ovarian cancer

Background: Ovarian cancer (OC) is one of the most lethal gynecological cancers worldwide. The pathogenesis of the disease and outcomes prediction of OC patients remain largely unclear. The present study aimed to explore the key genes and biological pathways in ovarian carcinoma development, as well...

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Autores principales: Tang, Weichun, Li, Jie, Chang, Xinxia, Jia, Lizhou, Tang, Qi, Wang, Ying, Zheng, Yanli, Sun, Lizhou, Feng, Zhenqing
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Portland Press Ltd. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7414523/
https://www.ncbi.nlm.nih.gov/pubmed/32716025
http://dx.doi.org/10.1042/BSR20201261
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author Tang, Weichun
Li, Jie
Chang, Xinxia
Jia, Lizhou
Tang, Qi
Wang, Ying
Zheng, Yanli
Sun, Lizhou
Feng, Zhenqing
author_facet Tang, Weichun
Li, Jie
Chang, Xinxia
Jia, Lizhou
Tang, Qi
Wang, Ying
Zheng, Yanli
Sun, Lizhou
Feng, Zhenqing
author_sort Tang, Weichun
collection PubMed
description Background: Ovarian cancer (OC) is one of the most lethal gynecological cancers worldwide. The pathogenesis of the disease and outcomes prediction of OC patients remain largely unclear. The present study aimed to explore the key genes and biological pathways in ovarian carcinoma development, as well as construct a prognostic model to predict patients’ overall survival (OS). Results: We identified 164 up-regulated and 80 down-regulated differentially expressed genes (DEGs) associated with OC. Gene Ontology (GO) term enrichment showed DEGs mainly correlated with spindle microtubes. For Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways, cell cycle was mostly enriched for the DEGs. The protein–protein interaction (PPI) network yielded 238 nodes and 1284 edges. Top three modules and ten hub genes were further filtered and analyzed. Three candidiate drugs targeting for therapy were also selected. Thirteen OS-related genes were selected and an eight-mRNA model was present to stratify patients into high- and low-risk groups with significantly different survival. Conclusions: The identified DEGs and biological pathways may provide new perspective on the pathogenesis and treatments of OC. The identified eight-mRNA signature has significant clinical implication for outcome prediction and tailored therapy guidance for OC patients.
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spelling pubmed-74145232020-08-13 Construction of a novel prognostic-predicting model correlated to ovarian cancer Tang, Weichun Li, Jie Chang, Xinxia Jia, Lizhou Tang, Qi Wang, Ying Zheng, Yanli Sun, Lizhou Feng, Zhenqing Biosci Rep Bioinformatics Background: Ovarian cancer (OC) is one of the most lethal gynecological cancers worldwide. The pathogenesis of the disease and outcomes prediction of OC patients remain largely unclear. The present study aimed to explore the key genes and biological pathways in ovarian carcinoma development, as well as construct a prognostic model to predict patients’ overall survival (OS). Results: We identified 164 up-regulated and 80 down-regulated differentially expressed genes (DEGs) associated with OC. Gene Ontology (GO) term enrichment showed DEGs mainly correlated with spindle microtubes. For Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways, cell cycle was mostly enriched for the DEGs. The protein–protein interaction (PPI) network yielded 238 nodes and 1284 edges. Top three modules and ten hub genes were further filtered and analyzed. Three candidiate drugs targeting for therapy were also selected. Thirteen OS-related genes were selected and an eight-mRNA model was present to stratify patients into high- and low-risk groups with significantly different survival. Conclusions: The identified DEGs and biological pathways may provide new perspective on the pathogenesis and treatments of OC. The identified eight-mRNA signature has significant clinical implication for outcome prediction and tailored therapy guidance for OC patients. Portland Press Ltd. 2020-08-07 /pmc/articles/PMC7414523/ /pubmed/32716025 http://dx.doi.org/10.1042/BSR20201261 Text en © 2020 The Author(s). https://creativecommons.org/licenses/by/4.0/ This is an open access article published by Portland Press Limited on behalf of the Biochemical Society and distributed under the Creative Commons Attribution License 4.0 (CC BY).
spellingShingle Bioinformatics
Tang, Weichun
Li, Jie
Chang, Xinxia
Jia, Lizhou
Tang, Qi
Wang, Ying
Zheng, Yanli
Sun, Lizhou
Feng, Zhenqing
Construction of a novel prognostic-predicting model correlated to ovarian cancer
title Construction of a novel prognostic-predicting model correlated to ovarian cancer
title_full Construction of a novel prognostic-predicting model correlated to ovarian cancer
title_fullStr Construction of a novel prognostic-predicting model correlated to ovarian cancer
title_full_unstemmed Construction of a novel prognostic-predicting model correlated to ovarian cancer
title_short Construction of a novel prognostic-predicting model correlated to ovarian cancer
title_sort construction of a novel prognostic-predicting model correlated to ovarian cancer
topic Bioinformatics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7414523/
https://www.ncbi.nlm.nih.gov/pubmed/32716025
http://dx.doi.org/10.1042/BSR20201261
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