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Construction of a novel prognostic-predicting model correlated to ovarian cancer
Background: Ovarian cancer (OC) is one of the most lethal gynecological cancers worldwide. The pathogenesis of the disease and outcomes prediction of OC patients remain largely unclear. The present study aimed to explore the key genes and biological pathways in ovarian carcinoma development, as well...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Portland Press Ltd.
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7414523/ https://www.ncbi.nlm.nih.gov/pubmed/32716025 http://dx.doi.org/10.1042/BSR20201261 |
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author | Tang, Weichun Li, Jie Chang, Xinxia Jia, Lizhou Tang, Qi Wang, Ying Zheng, Yanli Sun, Lizhou Feng, Zhenqing |
author_facet | Tang, Weichun Li, Jie Chang, Xinxia Jia, Lizhou Tang, Qi Wang, Ying Zheng, Yanli Sun, Lizhou Feng, Zhenqing |
author_sort | Tang, Weichun |
collection | PubMed |
description | Background: Ovarian cancer (OC) is one of the most lethal gynecological cancers worldwide. The pathogenesis of the disease and outcomes prediction of OC patients remain largely unclear. The present study aimed to explore the key genes and biological pathways in ovarian carcinoma development, as well as construct a prognostic model to predict patients’ overall survival (OS). Results: We identified 164 up-regulated and 80 down-regulated differentially expressed genes (DEGs) associated with OC. Gene Ontology (GO) term enrichment showed DEGs mainly correlated with spindle microtubes. For Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways, cell cycle was mostly enriched for the DEGs. The protein–protein interaction (PPI) network yielded 238 nodes and 1284 edges. Top three modules and ten hub genes were further filtered and analyzed. Three candidiate drugs targeting for therapy were also selected. Thirteen OS-related genes were selected and an eight-mRNA model was present to stratify patients into high- and low-risk groups with significantly different survival. Conclusions: The identified DEGs and biological pathways may provide new perspective on the pathogenesis and treatments of OC. The identified eight-mRNA signature has significant clinical implication for outcome prediction and tailored therapy guidance for OC patients. |
format | Online Article Text |
id | pubmed-7414523 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Portland Press Ltd. |
record_format | MEDLINE/PubMed |
spelling | pubmed-74145232020-08-13 Construction of a novel prognostic-predicting model correlated to ovarian cancer Tang, Weichun Li, Jie Chang, Xinxia Jia, Lizhou Tang, Qi Wang, Ying Zheng, Yanli Sun, Lizhou Feng, Zhenqing Biosci Rep Bioinformatics Background: Ovarian cancer (OC) is one of the most lethal gynecological cancers worldwide. The pathogenesis of the disease and outcomes prediction of OC patients remain largely unclear. The present study aimed to explore the key genes and biological pathways in ovarian carcinoma development, as well as construct a prognostic model to predict patients’ overall survival (OS). Results: We identified 164 up-regulated and 80 down-regulated differentially expressed genes (DEGs) associated with OC. Gene Ontology (GO) term enrichment showed DEGs mainly correlated with spindle microtubes. For Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways, cell cycle was mostly enriched for the DEGs. The protein–protein interaction (PPI) network yielded 238 nodes and 1284 edges. Top three modules and ten hub genes were further filtered and analyzed. Three candidiate drugs targeting for therapy were also selected. Thirteen OS-related genes were selected and an eight-mRNA model was present to stratify patients into high- and low-risk groups with significantly different survival. Conclusions: The identified DEGs and biological pathways may provide new perspective on the pathogenesis and treatments of OC. The identified eight-mRNA signature has significant clinical implication for outcome prediction and tailored therapy guidance for OC patients. Portland Press Ltd. 2020-08-07 /pmc/articles/PMC7414523/ /pubmed/32716025 http://dx.doi.org/10.1042/BSR20201261 Text en © 2020 The Author(s). https://creativecommons.org/licenses/by/4.0/ This is an open access article published by Portland Press Limited on behalf of the Biochemical Society and distributed under the Creative Commons Attribution License 4.0 (CC BY). |
spellingShingle | Bioinformatics Tang, Weichun Li, Jie Chang, Xinxia Jia, Lizhou Tang, Qi Wang, Ying Zheng, Yanli Sun, Lizhou Feng, Zhenqing Construction of a novel prognostic-predicting model correlated to ovarian cancer |
title | Construction of a novel prognostic-predicting model correlated to ovarian cancer |
title_full | Construction of a novel prognostic-predicting model correlated to ovarian cancer |
title_fullStr | Construction of a novel prognostic-predicting model correlated to ovarian cancer |
title_full_unstemmed | Construction of a novel prognostic-predicting model correlated to ovarian cancer |
title_short | Construction of a novel prognostic-predicting model correlated to ovarian cancer |
title_sort | construction of a novel prognostic-predicting model correlated to ovarian cancer |
topic | Bioinformatics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7414523/ https://www.ncbi.nlm.nih.gov/pubmed/32716025 http://dx.doi.org/10.1042/BSR20201261 |
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