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Comparison of media and standards for SARS-CoV-2 RT-qPCR without prior RNA preparation
Since the emergence of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) pandemic, there have been demands on the testing infrastructure that have strained testing capacity. As a simplification of method, we confirm the efficacy of RNA extraction-free RT-qPCR and saline as an alternat...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Cold Spring Harbor Laboratory
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7418746/ https://www.ncbi.nlm.nih.gov/pubmed/32793925 http://dx.doi.org/10.1101/2020.08.01.20166173 |
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author | Ragan, Katherine B. Bhadra, Sanchita Choi, Joon H. Towers, Dalton Sullivan, Christopher S. Ellington, Andrew D. |
author_facet | Ragan, Katherine B. Bhadra, Sanchita Choi, Joon H. Towers, Dalton Sullivan, Christopher S. Ellington, Andrew D. |
author_sort | Ragan, Katherine B. |
collection | PubMed |
description | Since the emergence of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) pandemic, there have been demands on the testing infrastructure that have strained testing capacity. As a simplification of method, we confirm the efficacy of RNA extraction-free RT-qPCR and saline as an alternative patient sample storage buffer. In addition, amongst potential reagent shortages, it has sometimes been difficult to obtain inactivated viral particles. We have therefore also characterized armored SARS-CoV-2 RNA from Asuragen as an alternative diagnostic standard to ATCC genomic SARS-CoV-2 RNA and heat inactivated virions and provide guidelines for its use in RT-qPCR. |
format | Online Article Text |
id | pubmed-7418746 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Cold Spring Harbor Laboratory |
record_format | MEDLINE/PubMed |
spelling | pubmed-74187462020-08-13 Comparison of media and standards for SARS-CoV-2 RT-qPCR without prior RNA preparation Ragan, Katherine B. Bhadra, Sanchita Choi, Joon H. Towers, Dalton Sullivan, Christopher S. Ellington, Andrew D. medRxiv Article Since the emergence of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) pandemic, there have been demands on the testing infrastructure that have strained testing capacity. As a simplification of method, we confirm the efficacy of RNA extraction-free RT-qPCR and saline as an alternative patient sample storage buffer. In addition, amongst potential reagent shortages, it has sometimes been difficult to obtain inactivated viral particles. We have therefore also characterized armored SARS-CoV-2 RNA from Asuragen as an alternative diagnostic standard to ATCC genomic SARS-CoV-2 RNA and heat inactivated virions and provide guidelines for its use in RT-qPCR. Cold Spring Harbor Laboratory 2020-09-17 /pmc/articles/PMC7418746/ /pubmed/32793925 http://dx.doi.org/10.1101/2020.08.01.20166173 Text en http://creativecommons.org/licenses/by-nc-nd/4.0/It is made available under a CC-BY-NC-ND 4.0 International license (http://creativecommons.org/licenses/by-nc-nd/4.0/) . |
spellingShingle | Article Ragan, Katherine B. Bhadra, Sanchita Choi, Joon H. Towers, Dalton Sullivan, Christopher S. Ellington, Andrew D. Comparison of media and standards for SARS-CoV-2 RT-qPCR without prior RNA preparation |
title | Comparison of media and standards for SARS-CoV-2 RT-qPCR without prior RNA preparation |
title_full | Comparison of media and standards for SARS-CoV-2 RT-qPCR without prior RNA preparation |
title_fullStr | Comparison of media and standards for SARS-CoV-2 RT-qPCR without prior RNA preparation |
title_full_unstemmed | Comparison of media and standards for SARS-CoV-2 RT-qPCR without prior RNA preparation |
title_short | Comparison of media and standards for SARS-CoV-2 RT-qPCR without prior RNA preparation |
title_sort | comparison of media and standards for sars-cov-2 rt-qpcr without prior rna preparation |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7418746/ https://www.ncbi.nlm.nih.gov/pubmed/32793925 http://dx.doi.org/10.1101/2020.08.01.20166173 |
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