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Comparison of media and standards for SARS-CoV-2 RT-qPCR without prior RNA preparation

Since the emergence of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) pandemic, there have been demands on the testing infrastructure that have strained testing capacity. As a simplification of method, we confirm the efficacy of RNA extraction-free RT-qPCR and saline as an alternat...

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Detalles Bibliográficos
Autores principales: Ragan, Katherine B., Bhadra, Sanchita, Choi, Joon H., Towers, Dalton, Sullivan, Christopher S., Ellington, Andrew D.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Cold Spring Harbor Laboratory 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7418746/
https://www.ncbi.nlm.nih.gov/pubmed/32793925
http://dx.doi.org/10.1101/2020.08.01.20166173
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author Ragan, Katherine B.
Bhadra, Sanchita
Choi, Joon H.
Towers, Dalton
Sullivan, Christopher S.
Ellington, Andrew D.
author_facet Ragan, Katherine B.
Bhadra, Sanchita
Choi, Joon H.
Towers, Dalton
Sullivan, Christopher S.
Ellington, Andrew D.
author_sort Ragan, Katherine B.
collection PubMed
description Since the emergence of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) pandemic, there have been demands on the testing infrastructure that have strained testing capacity. As a simplification of method, we confirm the efficacy of RNA extraction-free RT-qPCR and saline as an alternative patient sample storage buffer. In addition, amongst potential reagent shortages, it has sometimes been difficult to obtain inactivated viral particles. We have therefore also characterized armored SARS-CoV-2 RNA from Asuragen as an alternative diagnostic standard to ATCC genomic SARS-CoV-2 RNA and heat inactivated virions and provide guidelines for its use in RT-qPCR.
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spelling pubmed-74187462020-08-13 Comparison of media and standards for SARS-CoV-2 RT-qPCR without prior RNA preparation Ragan, Katherine B. Bhadra, Sanchita Choi, Joon H. Towers, Dalton Sullivan, Christopher S. Ellington, Andrew D. medRxiv Article Since the emergence of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) pandemic, there have been demands on the testing infrastructure that have strained testing capacity. As a simplification of method, we confirm the efficacy of RNA extraction-free RT-qPCR and saline as an alternative patient sample storage buffer. In addition, amongst potential reagent shortages, it has sometimes been difficult to obtain inactivated viral particles. We have therefore also characterized armored SARS-CoV-2 RNA from Asuragen as an alternative diagnostic standard to ATCC genomic SARS-CoV-2 RNA and heat inactivated virions and provide guidelines for its use in RT-qPCR. Cold Spring Harbor Laboratory 2020-09-17 /pmc/articles/PMC7418746/ /pubmed/32793925 http://dx.doi.org/10.1101/2020.08.01.20166173 Text en http://creativecommons.org/licenses/by-nc-nd/4.0/It is made available under a CC-BY-NC-ND 4.0 International license (http://creativecommons.org/licenses/by-nc-nd/4.0/) .
spellingShingle Article
Ragan, Katherine B.
Bhadra, Sanchita
Choi, Joon H.
Towers, Dalton
Sullivan, Christopher S.
Ellington, Andrew D.
Comparison of media and standards for SARS-CoV-2 RT-qPCR without prior RNA preparation
title Comparison of media and standards for SARS-CoV-2 RT-qPCR without prior RNA preparation
title_full Comparison of media and standards for SARS-CoV-2 RT-qPCR without prior RNA preparation
title_fullStr Comparison of media and standards for SARS-CoV-2 RT-qPCR without prior RNA preparation
title_full_unstemmed Comparison of media and standards for SARS-CoV-2 RT-qPCR without prior RNA preparation
title_short Comparison of media and standards for SARS-CoV-2 RT-qPCR without prior RNA preparation
title_sort comparison of media and standards for sars-cov-2 rt-qpcr without prior rna preparation
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7418746/
https://www.ncbi.nlm.nih.gov/pubmed/32793925
http://dx.doi.org/10.1101/2020.08.01.20166173
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