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SpeckleGAN: a generative adversarial network with an adaptive speckle layer to augment limited training data for ultrasound image processing

PURPOSE: In the field of medical image analysis, deep learning methods gained huge attention over the last years. This can be explained by their often improved performance compared to classic explicit algorithms. In order to work well, they need large amounts of annotated data for supervised learnin...

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Autores principales: Bargsten, Lennart, Schlaefer, Alexander
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer International Publishing 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7419454/
https://www.ncbi.nlm.nih.gov/pubmed/32556953
http://dx.doi.org/10.1007/s11548-020-02203-1
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author Bargsten, Lennart
Schlaefer, Alexander
author_facet Bargsten, Lennart
Schlaefer, Alexander
author_sort Bargsten, Lennart
collection PubMed
description PURPOSE: In the field of medical image analysis, deep learning methods gained huge attention over the last years. This can be explained by their often improved performance compared to classic explicit algorithms. In order to work well, they need large amounts of annotated data for supervised learning, but these are often not available in the case of medical image data. One way to overcome this limitation is to generate synthetic training data, e.g., by performing simulations to artificially augment the dataset. However, simulations require domain knowledge and are limited by the complexity of the underlying physical model. Another method to perform data augmentation is the generation of images by means of neural networks. METHODS: We developed a new algorithm for generation of synthetic medical images exhibiting speckle noise via generative adversarial networks (GANs). Key ingredient is a speckle layer, which can be incorporated into a neural network in order to add realistic and domain-dependent speckle. We call the resulting GAN architecture SpeckleGAN. RESULTS: We compared our new approach to an equivalent GAN without speckle layer. SpeckleGAN was able to generate ultrasound images with very crisp speckle patterns in contrast to the baseline GAN, even for small datasets of 50 images. SpeckleGAN outperformed the baseline GAN by up to 165 % with respect to the Fréchet Inception distance. For artery layer and lumen segmentation, a performance improvement of up to 4 % was obtained for small datasets, when these were augmented with images by SpeckleGAN. CONCLUSION: SpeckleGAN facilitates the generation of realistic synthetic ultrasound images to augment small training sets for deep learning based image processing. Its application is not restricted to ultrasound images but could be used for every imaging methodology that produces images with speckle such as optical coherence tomography or radar.
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spelling pubmed-74194542020-08-18 SpeckleGAN: a generative adversarial network with an adaptive speckle layer to augment limited training data for ultrasound image processing Bargsten, Lennart Schlaefer, Alexander Int J Comput Assist Radiol Surg Original Article PURPOSE: In the field of medical image analysis, deep learning methods gained huge attention over the last years. This can be explained by their often improved performance compared to classic explicit algorithms. In order to work well, they need large amounts of annotated data for supervised learning, but these are often not available in the case of medical image data. One way to overcome this limitation is to generate synthetic training data, e.g., by performing simulations to artificially augment the dataset. However, simulations require domain knowledge and are limited by the complexity of the underlying physical model. Another method to perform data augmentation is the generation of images by means of neural networks. METHODS: We developed a new algorithm for generation of synthetic medical images exhibiting speckle noise via generative adversarial networks (GANs). Key ingredient is a speckle layer, which can be incorporated into a neural network in order to add realistic and domain-dependent speckle. We call the resulting GAN architecture SpeckleGAN. RESULTS: We compared our new approach to an equivalent GAN without speckle layer. SpeckleGAN was able to generate ultrasound images with very crisp speckle patterns in contrast to the baseline GAN, even for small datasets of 50 images. SpeckleGAN outperformed the baseline GAN by up to 165 % with respect to the Fréchet Inception distance. For artery layer and lumen segmentation, a performance improvement of up to 4 % was obtained for small datasets, when these were augmented with images by SpeckleGAN. CONCLUSION: SpeckleGAN facilitates the generation of realistic synthetic ultrasound images to augment small training sets for deep learning based image processing. Its application is not restricted to ultrasound images but could be used for every imaging methodology that produces images with speckle such as optical coherence tomography or radar. Springer International Publishing 2020-06-18 2020 /pmc/articles/PMC7419454/ /pubmed/32556953 http://dx.doi.org/10.1007/s11548-020-02203-1 Text en © The Author(s) 2020 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Original Article
Bargsten, Lennart
Schlaefer, Alexander
SpeckleGAN: a generative adversarial network with an adaptive speckle layer to augment limited training data for ultrasound image processing
title SpeckleGAN: a generative adversarial network with an adaptive speckle layer to augment limited training data for ultrasound image processing
title_full SpeckleGAN: a generative adversarial network with an adaptive speckle layer to augment limited training data for ultrasound image processing
title_fullStr SpeckleGAN: a generative adversarial network with an adaptive speckle layer to augment limited training data for ultrasound image processing
title_full_unstemmed SpeckleGAN: a generative adversarial network with an adaptive speckle layer to augment limited training data for ultrasound image processing
title_short SpeckleGAN: a generative adversarial network with an adaptive speckle layer to augment limited training data for ultrasound image processing
title_sort specklegan: a generative adversarial network with an adaptive speckle layer to augment limited training data for ultrasound image processing
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7419454/
https://www.ncbi.nlm.nih.gov/pubmed/32556953
http://dx.doi.org/10.1007/s11548-020-02203-1
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