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Contributions to the ‘noise floor’ in gene expression in a population of dividing cells

Experiments with cells reveal the existence of a lower bound for protein noise, the noise floor, in highly expressed genes. Its origins are still debated. We propose a minimal model of gene expression in a proliferating bacterial cell population. The model predicts the existence of a noise floor and...

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Detalles Bibliográficos
Autores principales: Jędrak, Jakub, Ochab-Marcinek, Anna
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7419568/
https://www.ncbi.nlm.nih.gov/pubmed/32782314
http://dx.doi.org/10.1038/s41598-020-69217-2
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author Jędrak, Jakub
Ochab-Marcinek, Anna
author_facet Jędrak, Jakub
Ochab-Marcinek, Anna
author_sort Jędrak, Jakub
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description Experiments with cells reveal the existence of a lower bound for protein noise, the noise floor, in highly expressed genes. Its origins are still debated. We propose a minimal model of gene expression in a proliferating bacterial cell population. The model predicts the existence of a noise floor and it semi-quantitatively reproduces the curved shape of the experimental noise vs. mean protein concentration plots. When the cell volume increases in a different manner than does the mean protein copy number, the noise floor level is determined by the cell population’s age structure and by the dependence of the mean protein concentration on cell age. Additionally, the noise floor level may depend on a biological limit for the mean number of bursts in the cell cycle. In that case, the noise floor level depends on the burst size distribution width but it is insensitive to the mean burst size. Our model quantifies the contributions of each of these mechanisms to gene expression noise.
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spelling pubmed-74195682020-08-13 Contributions to the ‘noise floor’ in gene expression in a population of dividing cells Jędrak, Jakub Ochab-Marcinek, Anna Sci Rep Article Experiments with cells reveal the existence of a lower bound for protein noise, the noise floor, in highly expressed genes. Its origins are still debated. We propose a minimal model of gene expression in a proliferating bacterial cell population. The model predicts the existence of a noise floor and it semi-quantitatively reproduces the curved shape of the experimental noise vs. mean protein concentration plots. When the cell volume increases in a different manner than does the mean protein copy number, the noise floor level is determined by the cell population’s age structure and by the dependence of the mean protein concentration on cell age. Additionally, the noise floor level may depend on a biological limit for the mean number of bursts in the cell cycle. In that case, the noise floor level depends on the burst size distribution width but it is insensitive to the mean burst size. Our model quantifies the contributions of each of these mechanisms to gene expression noise. Nature Publishing Group UK 2020-08-11 /pmc/articles/PMC7419568/ /pubmed/32782314 http://dx.doi.org/10.1038/s41598-020-69217-2 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Jędrak, Jakub
Ochab-Marcinek, Anna
Contributions to the ‘noise floor’ in gene expression in a population of dividing cells
title Contributions to the ‘noise floor’ in gene expression in a population of dividing cells
title_full Contributions to the ‘noise floor’ in gene expression in a population of dividing cells
title_fullStr Contributions to the ‘noise floor’ in gene expression in a population of dividing cells
title_full_unstemmed Contributions to the ‘noise floor’ in gene expression in a population of dividing cells
title_short Contributions to the ‘noise floor’ in gene expression in a population of dividing cells
title_sort contributions to the ‘noise floor’ in gene expression in a population of dividing cells
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7419568/
https://www.ncbi.nlm.nih.gov/pubmed/32782314
http://dx.doi.org/10.1038/s41598-020-69217-2
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