Whole genome sequence data of Lactobacillus fermentum HFD1, the producer of antibacterial peptides

Here we report the whole genome sequence of Lactobacillus fermentum HFD1 strain, the producer of antibacterial peptides. The genome consists of one circular chromosome with 2101878 bp in length and GC-content of 51.8%, and includes linear DNA with 5386 bp in length with 100% identity to bacteriophag...

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Autores principales: Ozhegov, G.D., Pavlova, A.S., Zhuravleva, D.E., Gogoleva, N.E., Shagimardanova, E.I., Markelova, M.I., Yarullina, D.R., Kayumov, A.R.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2020
Materias:
Biochemistry, Genetics and Molecular Biology
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7419572/
https://www.ncbi.nlm.nih.gov/pubmed/32802923
http://dx.doi.org/10.1016/j.dib.2020.106105
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author Ozhegov, G.D.
Pavlova, A.S.
Zhuravleva, D.E.
Gogoleva, N.E.
Shagimardanova, E.I.
Markelova, M.I.
Yarullina, D.R.
Kayumov, A.R.
author_facet Ozhegov, G.D.
Pavlova, A.S.
Zhuravleva, D.E.
Gogoleva, N.E.
Shagimardanova, E.I.
Markelova, M.I.
Yarullina, D.R.
Kayumov, A.R.
author_sort Ozhegov, G.D.
collection PubMed
description Here we report the whole genome sequence of Lactobacillus fermentum HFD1 strain, the producer of antibacterial peptides. The genome consists of one circular chromosome with 2101878 bp in length and GC-content of 51.8%, and includes linear DNA with 5386 bp in length with 100% identity to bacteriophage phiX174. The analysis of the genome has revealed 2049 genes encoding for proteins including 867 proteins without known function and 70 genes encoding for RNAs (10 rRNAs, 59 tRNAs and 1 tmRNA). Putative genes responsible for the biosynthesis of 4 antimicrobial peptides were identified. The NCBI Bioproject has been deposited at NCBI under the accession number PRJNA615901 (https://www.ncbi.nlm.nih.gov/bioproject/PRJNA615901/) and consist of full annotated genome and raw sequence data.
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spelling pubmed-74195722020-08-14 Whole genome sequence data of Lactobacillus fermentum HFD1, the producer of antibacterial peptides Ozhegov, G.D. Pavlova, A.S. Zhuravleva, D.E. Gogoleva, N.E. Shagimardanova, E.I. Markelova, M.I. Yarullina, D.R. Kayumov, A.R. Data Brief Biochemistry, Genetics and Molecular Biology Here we report the whole genome sequence of Lactobacillus fermentum HFD1 strain, the producer of antibacterial peptides. The genome consists of one circular chromosome with 2101878 bp in length and GC-content of 51.8%, and includes linear DNA with 5386 bp in length with 100% identity to bacteriophage phiX174. The analysis of the genome has revealed 2049 genes encoding for proteins including 867 proteins without known function and 70 genes encoding for RNAs (10 rRNAs, 59 tRNAs and 1 tmRNA). Putative genes responsible for the biosynthesis of 4 antimicrobial peptides were identified. The NCBI Bioproject has been deposited at NCBI under the accession number PRJNA615901 (https://www.ncbi.nlm.nih.gov/bioproject/PRJNA615901/) and consist of full annotated genome and raw sequence data. Elsevier 2020-08-01 /pmc/articles/PMC7419572/ /pubmed/32802923 http://dx.doi.org/10.1016/j.dib.2020.106105 Text en © 2020 The Author(s) http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Biochemistry, Genetics and Molecular Biology
Ozhegov, G.D.
Pavlova, A.S.
Zhuravleva, D.E.
Gogoleva, N.E.
Shagimardanova, E.I.
Markelova, M.I.
Yarullina, D.R.
Kayumov, A.R.
Whole genome sequence data of Lactobacillus fermentum HFD1, the producer of antibacterial peptides
title Whole genome sequence data of Lactobacillus fermentum HFD1, the producer of antibacterial peptides
title_full Whole genome sequence data of Lactobacillus fermentum HFD1, the producer of antibacterial peptides
title_fullStr Whole genome sequence data of Lactobacillus fermentum HFD1, the producer of antibacterial peptides
title_full_unstemmed Whole genome sequence data of Lactobacillus fermentum HFD1, the producer of antibacterial peptides
title_short Whole genome sequence data of Lactobacillus fermentum HFD1, the producer of antibacterial peptides
title_sort whole genome sequence data of lactobacillus fermentum hfd1, the producer of antibacterial peptides
topic Biochemistry, Genetics and Molecular Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7419572/
https://www.ncbi.nlm.nih.gov/pubmed/32802923
http://dx.doi.org/10.1016/j.dib.2020.106105
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