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A deep error correction network for compressed sensing MRI

BACKGROUND: CS-MRI (compressed sensing for magnetic resonance imaging) exploits image sparsity properties to reconstruct MRI from very few Fourier k-space measurements. Due to imperfect modelings in the inverse imaging, state-of-the-art CS-MRI methods tend to leave structural reconstruction errors....

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Autores principales: Sun, Liyan, Wu, Yawen, Fan, Zhiwen, Ding, Xinghao, Huang, Yue, Paisley, John
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7422575/
https://www.ncbi.nlm.nih.gov/pubmed/32903379
http://dx.doi.org/10.1186/s42490-020-0037-5
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author Sun, Liyan
Wu, Yawen
Fan, Zhiwen
Ding, Xinghao
Huang, Yue
Paisley, John
author_facet Sun, Liyan
Wu, Yawen
Fan, Zhiwen
Ding, Xinghao
Huang, Yue
Paisley, John
author_sort Sun, Liyan
collection PubMed
description BACKGROUND: CS-MRI (compressed sensing for magnetic resonance imaging) exploits image sparsity properties to reconstruct MRI from very few Fourier k-space measurements. Due to imperfect modelings in the inverse imaging, state-of-the-art CS-MRI methods tend to leave structural reconstruction errors. Compensating such errors in the reconstruction could help further improve the reconstruction quality. RESULTS: In this work, we propose a DECN (deep error correction network) for CS-MRI. The DECN model consists of three parts, which we refer to as modules: a guide, or template, module, an error correction module, and a data fidelity module. Existing CS-MRI algorithms can serve as the template module for guiding the reconstruction. Using this template as a guide, the error correction module learns a CNN (convolutional neural network) to map the k-space data in a way that adjusts for the reconstruction error of the template image. We propose a deep error correction network. Our experimental results show the proposed DECN CS-MRI reconstruction framework can considerably improve upon existing inversion algorithms by supplementing with an error-correcting CNN. CONCLUSIONS: In the proposed a deep error correction framework, any off-the-shelf CS-MRI algorithm can be used as template generation. Then a deep neural network is used to compensate reconstruction errors. The promising experimental results validate the effectiveness and utility of the proposed framework.
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spelling pubmed-74225752020-09-04 A deep error correction network for compressed sensing MRI Sun, Liyan Wu, Yawen Fan, Zhiwen Ding, Xinghao Huang, Yue Paisley, John BMC Biomed Eng Research Article BACKGROUND: CS-MRI (compressed sensing for magnetic resonance imaging) exploits image sparsity properties to reconstruct MRI from very few Fourier k-space measurements. Due to imperfect modelings in the inverse imaging, state-of-the-art CS-MRI methods tend to leave structural reconstruction errors. Compensating such errors in the reconstruction could help further improve the reconstruction quality. RESULTS: In this work, we propose a DECN (deep error correction network) for CS-MRI. The DECN model consists of three parts, which we refer to as modules: a guide, or template, module, an error correction module, and a data fidelity module. Existing CS-MRI algorithms can serve as the template module for guiding the reconstruction. Using this template as a guide, the error correction module learns a CNN (convolutional neural network) to map the k-space data in a way that adjusts for the reconstruction error of the template image. We propose a deep error correction network. Our experimental results show the proposed DECN CS-MRI reconstruction framework can considerably improve upon existing inversion algorithms by supplementing with an error-correcting CNN. CONCLUSIONS: In the proposed a deep error correction framework, any off-the-shelf CS-MRI algorithm can be used as template generation. Then a deep neural network is used to compensate reconstruction errors. The promising experimental results validate the effectiveness and utility of the proposed framework. BioMed Central 2020-02-27 /pmc/articles/PMC7422575/ /pubmed/32903379 http://dx.doi.org/10.1186/s42490-020-0037-5 Text en © The Author(s) 2020 Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver(http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Research Article
Sun, Liyan
Wu, Yawen
Fan, Zhiwen
Ding, Xinghao
Huang, Yue
Paisley, John
A deep error correction network for compressed sensing MRI
title A deep error correction network for compressed sensing MRI
title_full A deep error correction network for compressed sensing MRI
title_fullStr A deep error correction network for compressed sensing MRI
title_full_unstemmed A deep error correction network for compressed sensing MRI
title_short A deep error correction network for compressed sensing MRI
title_sort deep error correction network for compressed sensing mri
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7422575/
https://www.ncbi.nlm.nih.gov/pubmed/32903379
http://dx.doi.org/10.1186/s42490-020-0037-5
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