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A New Method for CTC Images Recognition Based on Machine Learning
Circulating tumor cells (CTCs) derived from primary tumors and/or metastatic tumors are markers for tumor prognosis, and can also be used to monitor therapeutic efficacy and tumor recurrence. Circulating tumor cells enrichment and screening can be automated, but the final counting of CTCs currently...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7423836/ https://www.ncbi.nlm.nih.gov/pubmed/32850745 http://dx.doi.org/10.3389/fbioe.2020.00897 |
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author | He, Binsheng Lu, Qingqing Lang, Jidong Yu, Hai Peng, Chao Bing, Pingping Li, Shijun Zhou, Qiliang Liang, Yuebin Tian, Geng |
author_facet | He, Binsheng Lu, Qingqing Lang, Jidong Yu, Hai Peng, Chao Bing, Pingping Li, Shijun Zhou, Qiliang Liang, Yuebin Tian, Geng |
author_sort | He, Binsheng |
collection | PubMed |
description | Circulating tumor cells (CTCs) derived from primary tumors and/or metastatic tumors are markers for tumor prognosis, and can also be used to monitor therapeutic efficacy and tumor recurrence. Circulating tumor cells enrichment and screening can be automated, but the final counting of CTCs currently requires manual intervention. This not only requires the participation of experienced pathologists, but also easily causes artificial misjudgment. Medical image recognition based on machine learning can effectively reduce the workload and improve the level of automation. So, we use machine learning to identify CTCs. First, we collected the CTC test results of 600 patients. After immunofluorescence staining, each picture presented a positive CTC cell nucleus and several negative controls. The images of CTCs were then segmented by image denoising, image filtering, edge detection, image expansion and contraction techniques using python’s openCV scheme. Subsequently, traditional image recognition methods and machine learning were used to identify CTCs. Machine learning algorithms are implemented using convolutional neural network deep learning networks for training. We took 2300 cells from 600 patients for training and testing. About 1300 cells were used for training and the others were used for testing. The sensitivity and specificity of recognition reached 90.3 and 91.3%, respectively. We will further revise our models, hoping to achieve a higher sensitivity and specificity. |
format | Online Article Text |
id | pubmed-7423836 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-74238362020-08-25 A New Method for CTC Images Recognition Based on Machine Learning He, Binsheng Lu, Qingqing Lang, Jidong Yu, Hai Peng, Chao Bing, Pingping Li, Shijun Zhou, Qiliang Liang, Yuebin Tian, Geng Front Bioeng Biotechnol Bioengineering and Biotechnology Circulating tumor cells (CTCs) derived from primary tumors and/or metastatic tumors are markers for tumor prognosis, and can also be used to monitor therapeutic efficacy and tumor recurrence. Circulating tumor cells enrichment and screening can be automated, but the final counting of CTCs currently requires manual intervention. This not only requires the participation of experienced pathologists, but also easily causes artificial misjudgment. Medical image recognition based on machine learning can effectively reduce the workload and improve the level of automation. So, we use machine learning to identify CTCs. First, we collected the CTC test results of 600 patients. After immunofluorescence staining, each picture presented a positive CTC cell nucleus and several negative controls. The images of CTCs were then segmented by image denoising, image filtering, edge detection, image expansion and contraction techniques using python’s openCV scheme. Subsequently, traditional image recognition methods and machine learning were used to identify CTCs. Machine learning algorithms are implemented using convolutional neural network deep learning networks for training. We took 2300 cells from 600 patients for training and testing. About 1300 cells were used for training and the others were used for testing. The sensitivity and specificity of recognition reached 90.3 and 91.3%, respectively. We will further revise our models, hoping to achieve a higher sensitivity and specificity. Frontiers Media S.A. 2020-08-06 /pmc/articles/PMC7423836/ /pubmed/32850745 http://dx.doi.org/10.3389/fbioe.2020.00897 Text en Copyright © 2020 He, Lu, Lang, Yu, Peng, Bing, Li, Zhou, Liang and Tian. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Bioengineering and Biotechnology He, Binsheng Lu, Qingqing Lang, Jidong Yu, Hai Peng, Chao Bing, Pingping Li, Shijun Zhou, Qiliang Liang, Yuebin Tian, Geng A New Method for CTC Images Recognition Based on Machine Learning |
title | A New Method for CTC Images Recognition Based on Machine Learning |
title_full | A New Method for CTC Images Recognition Based on Machine Learning |
title_fullStr | A New Method for CTC Images Recognition Based on Machine Learning |
title_full_unstemmed | A New Method for CTC Images Recognition Based on Machine Learning |
title_short | A New Method for CTC Images Recognition Based on Machine Learning |
title_sort | new method for ctc images recognition based on machine learning |
topic | Bioengineering and Biotechnology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7423836/ https://www.ncbi.nlm.nih.gov/pubmed/32850745 http://dx.doi.org/10.3389/fbioe.2020.00897 |
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