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A New Method for CTC Images Recognition Based on Machine Learning

Circulating tumor cells (CTCs) derived from primary tumors and/or metastatic tumors are markers for tumor prognosis, and can also be used to monitor therapeutic efficacy and tumor recurrence. Circulating tumor cells enrichment and screening can be automated, but the final counting of CTCs currently...

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Autores principales: He, Binsheng, Lu, Qingqing, Lang, Jidong, Yu, Hai, Peng, Chao, Bing, Pingping, Li, Shijun, Zhou, Qiliang, Liang, Yuebin, Tian, Geng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7423836/
https://www.ncbi.nlm.nih.gov/pubmed/32850745
http://dx.doi.org/10.3389/fbioe.2020.00897
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author He, Binsheng
Lu, Qingqing
Lang, Jidong
Yu, Hai
Peng, Chao
Bing, Pingping
Li, Shijun
Zhou, Qiliang
Liang, Yuebin
Tian, Geng
author_facet He, Binsheng
Lu, Qingqing
Lang, Jidong
Yu, Hai
Peng, Chao
Bing, Pingping
Li, Shijun
Zhou, Qiliang
Liang, Yuebin
Tian, Geng
author_sort He, Binsheng
collection PubMed
description Circulating tumor cells (CTCs) derived from primary tumors and/or metastatic tumors are markers for tumor prognosis, and can also be used to monitor therapeutic efficacy and tumor recurrence. Circulating tumor cells enrichment and screening can be automated, but the final counting of CTCs currently requires manual intervention. This not only requires the participation of experienced pathologists, but also easily causes artificial misjudgment. Medical image recognition based on machine learning can effectively reduce the workload and improve the level of automation. So, we use machine learning to identify CTCs. First, we collected the CTC test results of 600 patients. After immunofluorescence staining, each picture presented a positive CTC cell nucleus and several negative controls. The images of CTCs were then segmented by image denoising, image filtering, edge detection, image expansion and contraction techniques using python’s openCV scheme. Subsequently, traditional image recognition methods and machine learning were used to identify CTCs. Machine learning algorithms are implemented using convolutional neural network deep learning networks for training. We took 2300 cells from 600 patients for training and testing. About 1300 cells were used for training and the others were used for testing. The sensitivity and specificity of recognition reached 90.3 and 91.3%, respectively. We will further revise our models, hoping to achieve a higher sensitivity and specificity.
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spelling pubmed-74238362020-08-25 A New Method for CTC Images Recognition Based on Machine Learning He, Binsheng Lu, Qingqing Lang, Jidong Yu, Hai Peng, Chao Bing, Pingping Li, Shijun Zhou, Qiliang Liang, Yuebin Tian, Geng Front Bioeng Biotechnol Bioengineering and Biotechnology Circulating tumor cells (CTCs) derived from primary tumors and/or metastatic tumors are markers for tumor prognosis, and can also be used to monitor therapeutic efficacy and tumor recurrence. Circulating tumor cells enrichment and screening can be automated, but the final counting of CTCs currently requires manual intervention. This not only requires the participation of experienced pathologists, but also easily causes artificial misjudgment. Medical image recognition based on machine learning can effectively reduce the workload and improve the level of automation. So, we use machine learning to identify CTCs. First, we collected the CTC test results of 600 patients. After immunofluorescence staining, each picture presented a positive CTC cell nucleus and several negative controls. The images of CTCs were then segmented by image denoising, image filtering, edge detection, image expansion and contraction techniques using python’s openCV scheme. Subsequently, traditional image recognition methods and machine learning were used to identify CTCs. Machine learning algorithms are implemented using convolutional neural network deep learning networks for training. We took 2300 cells from 600 patients for training and testing. About 1300 cells were used for training and the others were used for testing. The sensitivity and specificity of recognition reached 90.3 and 91.3%, respectively. We will further revise our models, hoping to achieve a higher sensitivity and specificity. Frontiers Media S.A. 2020-08-06 /pmc/articles/PMC7423836/ /pubmed/32850745 http://dx.doi.org/10.3389/fbioe.2020.00897 Text en Copyright © 2020 He, Lu, Lang, Yu, Peng, Bing, Li, Zhou, Liang and Tian. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Bioengineering and Biotechnology
He, Binsheng
Lu, Qingqing
Lang, Jidong
Yu, Hai
Peng, Chao
Bing, Pingping
Li, Shijun
Zhou, Qiliang
Liang, Yuebin
Tian, Geng
A New Method for CTC Images Recognition Based on Machine Learning
title A New Method for CTC Images Recognition Based on Machine Learning
title_full A New Method for CTC Images Recognition Based on Machine Learning
title_fullStr A New Method for CTC Images Recognition Based on Machine Learning
title_full_unstemmed A New Method for CTC Images Recognition Based on Machine Learning
title_short A New Method for CTC Images Recognition Based on Machine Learning
title_sort new method for ctc images recognition based on machine learning
topic Bioengineering and Biotechnology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7423836/
https://www.ncbi.nlm.nih.gov/pubmed/32850745
http://dx.doi.org/10.3389/fbioe.2020.00897
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