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Identification of potential diagnostic gene biomarkers in patients with osteoarthritis
The current study was aimed to identify diagnostic gene signature for osteoarthritis (OA). The differentially expressed genes (DEGs) in synovial membrane samples and blood samples were respectively identified from the GEO dataset. The intersection DEGs between synovial membrane and blood were furthe...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7424510/ https://www.ncbi.nlm.nih.gov/pubmed/32788627 http://dx.doi.org/10.1038/s41598-020-70596-9 |
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author | Wang, Xinling Yu, Yang Huang, Yong Zhu, Mingshuang Chen, Rigao Liao, Zhanghui Yang, Shipeng |
author_facet | Wang, Xinling Yu, Yang Huang, Yong Zhu, Mingshuang Chen, Rigao Liao, Zhanghui Yang, Shipeng |
author_sort | Wang, Xinling |
collection | PubMed |
description | The current study was aimed to identify diagnostic gene signature for osteoarthritis (OA). The differentially expressed genes (DEGs) in synovial membrane samples and blood samples were respectively identified from the GEO dataset. The intersection DEGs between synovial membrane and blood were further screened out, followed by the functional annotation of these common DEGs. The optimal intersection gene biomarkers for OA diagnostics were determined. The GSE51588 dataset of articular cartilage was used for expression validation and further diagnostic analysis validation of identified gene biomarkers for OA diagnostics. There were 379 intersection DEGs were obtained between the synovial membrane and blood samples of OA. 22 DEGs had a diagnostic value for OA. After further screening, a total of 9 DEGs including TLR7, RTP4, CRIP1, ZNF688, TOP1, EIF1AY, RAB2A, ZNF281 and UIMC1 were identified for OA diagnostic. The identified DEGs could be considered as potential diagnostic biomarkers for OA. |
format | Online Article Text |
id | pubmed-7424510 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-74245102020-08-14 Identification of potential diagnostic gene biomarkers in patients with osteoarthritis Wang, Xinling Yu, Yang Huang, Yong Zhu, Mingshuang Chen, Rigao Liao, Zhanghui Yang, Shipeng Sci Rep Article The current study was aimed to identify diagnostic gene signature for osteoarthritis (OA). The differentially expressed genes (DEGs) in synovial membrane samples and blood samples were respectively identified from the GEO dataset. The intersection DEGs between synovial membrane and blood were further screened out, followed by the functional annotation of these common DEGs. The optimal intersection gene biomarkers for OA diagnostics were determined. The GSE51588 dataset of articular cartilage was used for expression validation and further diagnostic analysis validation of identified gene biomarkers for OA diagnostics. There were 379 intersection DEGs were obtained between the synovial membrane and blood samples of OA. 22 DEGs had a diagnostic value for OA. After further screening, a total of 9 DEGs including TLR7, RTP4, CRIP1, ZNF688, TOP1, EIF1AY, RAB2A, ZNF281 and UIMC1 were identified for OA diagnostic. The identified DEGs could be considered as potential diagnostic biomarkers for OA. Nature Publishing Group UK 2020-08-12 /pmc/articles/PMC7424510/ /pubmed/32788627 http://dx.doi.org/10.1038/s41598-020-70596-9 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Wang, Xinling Yu, Yang Huang, Yong Zhu, Mingshuang Chen, Rigao Liao, Zhanghui Yang, Shipeng Identification of potential diagnostic gene biomarkers in patients with osteoarthritis |
title | Identification of potential diagnostic gene biomarkers in patients with osteoarthritis |
title_full | Identification of potential diagnostic gene biomarkers in patients with osteoarthritis |
title_fullStr | Identification of potential diagnostic gene biomarkers in patients with osteoarthritis |
title_full_unstemmed | Identification of potential diagnostic gene biomarkers in patients with osteoarthritis |
title_short | Identification of potential diagnostic gene biomarkers in patients with osteoarthritis |
title_sort | identification of potential diagnostic gene biomarkers in patients with osteoarthritis |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7424510/ https://www.ncbi.nlm.nih.gov/pubmed/32788627 http://dx.doi.org/10.1038/s41598-020-70596-9 |
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