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Identification of potential diagnostic gene biomarkers in patients with osteoarthritis

The current study was aimed to identify diagnostic gene signature for osteoarthritis (OA). The differentially expressed genes (DEGs) in synovial membrane samples and blood samples were respectively identified from the GEO dataset. The intersection DEGs between synovial membrane and blood were furthe...

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Autores principales: Wang, Xinling, Yu, Yang, Huang, Yong, Zhu, Mingshuang, Chen, Rigao, Liao, Zhanghui, Yang, Shipeng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7424510/
https://www.ncbi.nlm.nih.gov/pubmed/32788627
http://dx.doi.org/10.1038/s41598-020-70596-9
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author Wang, Xinling
Yu, Yang
Huang, Yong
Zhu, Mingshuang
Chen, Rigao
Liao, Zhanghui
Yang, Shipeng
author_facet Wang, Xinling
Yu, Yang
Huang, Yong
Zhu, Mingshuang
Chen, Rigao
Liao, Zhanghui
Yang, Shipeng
author_sort Wang, Xinling
collection PubMed
description The current study was aimed to identify diagnostic gene signature for osteoarthritis (OA). The differentially expressed genes (DEGs) in synovial membrane samples and blood samples were respectively identified from the GEO dataset. The intersection DEGs between synovial membrane and blood were further screened out, followed by the functional annotation of these common DEGs. The optimal intersection gene biomarkers for OA diagnostics were determined. The GSE51588 dataset of articular cartilage was used for expression validation and further diagnostic analysis validation of identified gene biomarkers for OA diagnostics. There were 379 intersection DEGs were obtained between the synovial membrane and blood samples of OA. 22 DEGs had a diagnostic value for OA. After further screening, a total of 9 DEGs including TLR7, RTP4, CRIP1, ZNF688, TOP1, EIF1AY, RAB2A, ZNF281 and UIMC1 were identified for OA diagnostic. The identified DEGs could be considered as potential diagnostic biomarkers for OA.
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spelling pubmed-74245102020-08-14 Identification of potential diagnostic gene biomarkers in patients with osteoarthritis Wang, Xinling Yu, Yang Huang, Yong Zhu, Mingshuang Chen, Rigao Liao, Zhanghui Yang, Shipeng Sci Rep Article The current study was aimed to identify diagnostic gene signature for osteoarthritis (OA). The differentially expressed genes (DEGs) in synovial membrane samples and blood samples were respectively identified from the GEO dataset. The intersection DEGs between synovial membrane and blood were further screened out, followed by the functional annotation of these common DEGs. The optimal intersection gene biomarkers for OA diagnostics were determined. The GSE51588 dataset of articular cartilage was used for expression validation and further diagnostic analysis validation of identified gene biomarkers for OA diagnostics. There were 379 intersection DEGs were obtained between the synovial membrane and blood samples of OA. 22 DEGs had a diagnostic value for OA. After further screening, a total of 9 DEGs including TLR7, RTP4, CRIP1, ZNF688, TOP1, EIF1AY, RAB2A, ZNF281 and UIMC1 were identified for OA diagnostic. The identified DEGs could be considered as potential diagnostic biomarkers for OA. Nature Publishing Group UK 2020-08-12 /pmc/articles/PMC7424510/ /pubmed/32788627 http://dx.doi.org/10.1038/s41598-020-70596-9 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Wang, Xinling
Yu, Yang
Huang, Yong
Zhu, Mingshuang
Chen, Rigao
Liao, Zhanghui
Yang, Shipeng
Identification of potential diagnostic gene biomarkers in patients with osteoarthritis
title Identification of potential diagnostic gene biomarkers in patients with osteoarthritis
title_full Identification of potential diagnostic gene biomarkers in patients with osteoarthritis
title_fullStr Identification of potential diagnostic gene biomarkers in patients with osteoarthritis
title_full_unstemmed Identification of potential diagnostic gene biomarkers in patients with osteoarthritis
title_short Identification of potential diagnostic gene biomarkers in patients with osteoarthritis
title_sort identification of potential diagnostic gene biomarkers in patients with osteoarthritis
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7424510/
https://www.ncbi.nlm.nih.gov/pubmed/32788627
http://dx.doi.org/10.1038/s41598-020-70596-9
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