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Ab Initio Evaluation of Complexation Energies for Cyclodextrin-Drug Inclusion Complexes
[Image: see text] We investigated the reliability of ab initio methods to predict the binding energies of molecular encapsulation complexes. Vast possibilities for the docking conformations were screened down to a couple of geometries using a semiempirical docking simulation. For the candidates, we...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2020
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7424588/ https://www.ncbi.nlm.nih.gov/pubmed/32803030 http://dx.doi.org/10.1021/acsomega.0c01059 |
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author | Oqmhula, Kenji Hongo, Kenta Maezono, Ryo Ichibha, Tom |
author_facet | Oqmhula, Kenji Hongo, Kenta Maezono, Ryo Ichibha, Tom |
author_sort | Oqmhula, Kenji |
collection | PubMed |
description | [Image: see text] We investigated the reliability of ab initio methods to predict the binding energies of molecular encapsulation complexes. Vast possibilities for the docking conformations were screened down to a couple of geometries using a semiempirical docking simulation. For the candidates, we applied density functional theory (DFT) with several exchange–correlation (XC) functionals to evaluate the binding energy. We carefully selected and compared the functionals to elucidate the role of the characteristic factors in achieving the XC effects. It is clarified that the improper combination in XC with D3 dispersion force correction leads to overbinding. For achieving a proper combination, the exchange interaction over the longer range to avoid the overbinding was found to be important. |
format | Online Article Text |
id | pubmed-7424588 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-74245882020-08-14 Ab Initio Evaluation of Complexation Energies for Cyclodextrin-Drug Inclusion Complexes Oqmhula, Kenji Hongo, Kenta Maezono, Ryo Ichibha, Tom ACS Omega [Image: see text] We investigated the reliability of ab initio methods to predict the binding energies of molecular encapsulation complexes. Vast possibilities for the docking conformations were screened down to a couple of geometries using a semiempirical docking simulation. For the candidates, we applied density functional theory (DFT) with several exchange–correlation (XC) functionals to evaluate the binding energy. We carefully selected and compared the functionals to elucidate the role of the characteristic factors in achieving the XC effects. It is clarified that the improper combination in XC with D3 dispersion force correction leads to overbinding. For achieving a proper combination, the exchange interaction over the longer range to avoid the overbinding was found to be important. American Chemical Society 2020-07-28 /pmc/articles/PMC7424588/ /pubmed/32803030 http://dx.doi.org/10.1021/acsomega.0c01059 Text en Copyright © 2020 American Chemical Society This is an open access article published under an ACS AuthorChoice License (http://pubs.acs.org/page/policy/authorchoice_termsofuse.html) , which permits copying and redistribution of the article or any adaptations for non-commercial purposes. |
spellingShingle | Oqmhula, Kenji Hongo, Kenta Maezono, Ryo Ichibha, Tom Ab Initio Evaluation of Complexation Energies for Cyclodextrin-Drug Inclusion Complexes |
title | Ab Initio Evaluation of Complexation
Energies for Cyclodextrin-Drug Inclusion Complexes |
title_full | Ab Initio Evaluation of Complexation
Energies for Cyclodextrin-Drug Inclusion Complexes |
title_fullStr | Ab Initio Evaluation of Complexation
Energies for Cyclodextrin-Drug Inclusion Complexes |
title_full_unstemmed | Ab Initio Evaluation of Complexation
Energies for Cyclodextrin-Drug Inclusion Complexes |
title_short | Ab Initio Evaluation of Complexation
Energies for Cyclodextrin-Drug Inclusion Complexes |
title_sort | ab initio evaluation of complexation
energies for cyclodextrin-drug inclusion complexes |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7424588/ https://www.ncbi.nlm.nih.gov/pubmed/32803030 http://dx.doi.org/10.1021/acsomega.0c01059 |
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