Cargando…
A new survival model based on ferroptosis-related genes for prognostic prediction in clear cell renal cell carcinoma
In this study, we analyzed the clinical significance of ferroptosis-related genes (FRGs) in 32 cancer types in the GSCA database. We detected a 2-82% mutation rate among 36 FRGs. In clear cell renal cell carcinoma (ccRCC; n=539) tissues from the The Cancer Genome Atlas database, 30 of 36 FRGs were d...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Impact Journals
2020
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7425493/ https://www.ncbi.nlm.nih.gov/pubmed/32688345 http://dx.doi.org/10.18632/aging.103553 |
_version_ | 1783570506215063552 |
---|---|
author | Wu, Guangzhen Wang, Qifei Xu, Yingkun Li, Quanlin Cheng, Liang |
author_facet | Wu, Guangzhen Wang, Qifei Xu, Yingkun Li, Quanlin Cheng, Liang |
author_sort | Wu, Guangzhen |
collection | PubMed |
description | In this study, we analyzed the clinical significance of ferroptosis-related genes (FRGs) in 32 cancer types in the GSCA database. We detected a 2-82% mutation rate among 36 FRGs. In clear cell renal cell carcinoma (ccRCC; n=539) tissues from the The Cancer Genome Atlas database, 30 of 36 FRGs were differentially expressed (up- or down-regulated) compared to normal kidney tissues (n=72). Consensus clustering analysis identified two clusters of FRGs based on similar co-expression in ccRCC tissues. We then used LASSO regression analysis to build a new survival model based on five risk-related FRGs (CARS, NCOA4, FANCD2, HMGCR, and SLC7A11). Receiver operating characteristic curve analysis confirmed good prognostic performance of the new survival model with an area under the curve of 0.73. High FANCD2, CARS, and SLC7A11 expression and low HMGCR and NCOA4 expression were associated with high-risk ccRCC patients. Multivariate analysis showed that risk score, age, stage, and grade were independent risk factors associated with prognosis in ccRCC. These findings demonstrate that this five risk-related FRG-based survival model accurately predicts prognosis in ccRCC patients, and suggest FRGs are potential prognostic biomarkers and therapeutic targets in several cancer types. |
format | Online Article Text |
id | pubmed-7425493 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Impact Journals |
record_format | MEDLINE/PubMed |
spelling | pubmed-74254932020-08-25 A new survival model based on ferroptosis-related genes for prognostic prediction in clear cell renal cell carcinoma Wu, Guangzhen Wang, Qifei Xu, Yingkun Li, Quanlin Cheng, Liang Aging (Albany NY) Research Paper In this study, we analyzed the clinical significance of ferroptosis-related genes (FRGs) in 32 cancer types in the GSCA database. We detected a 2-82% mutation rate among 36 FRGs. In clear cell renal cell carcinoma (ccRCC; n=539) tissues from the The Cancer Genome Atlas database, 30 of 36 FRGs were differentially expressed (up- or down-regulated) compared to normal kidney tissues (n=72). Consensus clustering analysis identified two clusters of FRGs based on similar co-expression in ccRCC tissues. We then used LASSO regression analysis to build a new survival model based on five risk-related FRGs (CARS, NCOA4, FANCD2, HMGCR, and SLC7A11). Receiver operating characteristic curve analysis confirmed good prognostic performance of the new survival model with an area under the curve of 0.73. High FANCD2, CARS, and SLC7A11 expression and low HMGCR and NCOA4 expression were associated with high-risk ccRCC patients. Multivariate analysis showed that risk score, age, stage, and grade were independent risk factors associated with prognosis in ccRCC. These findings demonstrate that this five risk-related FRG-based survival model accurately predicts prognosis in ccRCC patients, and suggest FRGs are potential prognostic biomarkers and therapeutic targets in several cancer types. Impact Journals 2020-07-20 /pmc/articles/PMC7425493/ /pubmed/32688345 http://dx.doi.org/10.18632/aging.103553 Text en Copyright © 2020 Wu et al. http://creativecommons.org/licenses/by/3.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY 3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Paper Wu, Guangzhen Wang, Qifei Xu, Yingkun Li, Quanlin Cheng, Liang A new survival model based on ferroptosis-related genes for prognostic prediction in clear cell renal cell carcinoma |
title | A new survival model based on ferroptosis-related genes for prognostic prediction in clear cell renal cell carcinoma |
title_full | A new survival model based on ferroptosis-related genes for prognostic prediction in clear cell renal cell carcinoma |
title_fullStr | A new survival model based on ferroptosis-related genes for prognostic prediction in clear cell renal cell carcinoma |
title_full_unstemmed | A new survival model based on ferroptosis-related genes for prognostic prediction in clear cell renal cell carcinoma |
title_short | A new survival model based on ferroptosis-related genes for prognostic prediction in clear cell renal cell carcinoma |
title_sort | new survival model based on ferroptosis-related genes for prognostic prediction in clear cell renal cell carcinoma |
topic | Research Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7425493/ https://www.ncbi.nlm.nih.gov/pubmed/32688345 http://dx.doi.org/10.18632/aging.103553 |
work_keys_str_mv | AT wuguangzhen anewsurvivalmodelbasedonferroptosisrelatedgenesforprognosticpredictioninclearcellrenalcellcarcinoma AT wangqifei anewsurvivalmodelbasedonferroptosisrelatedgenesforprognosticpredictioninclearcellrenalcellcarcinoma AT xuyingkun anewsurvivalmodelbasedonferroptosisrelatedgenesforprognosticpredictioninclearcellrenalcellcarcinoma AT liquanlin anewsurvivalmodelbasedonferroptosisrelatedgenesforprognosticpredictioninclearcellrenalcellcarcinoma AT chengliang anewsurvivalmodelbasedonferroptosisrelatedgenesforprognosticpredictioninclearcellrenalcellcarcinoma AT wuguangzhen newsurvivalmodelbasedonferroptosisrelatedgenesforprognosticpredictioninclearcellrenalcellcarcinoma AT wangqifei newsurvivalmodelbasedonferroptosisrelatedgenesforprognosticpredictioninclearcellrenalcellcarcinoma AT xuyingkun newsurvivalmodelbasedonferroptosisrelatedgenesforprognosticpredictioninclearcellrenalcellcarcinoma AT liquanlin newsurvivalmodelbasedonferroptosisrelatedgenesforprognosticpredictioninclearcellrenalcellcarcinoma AT chengliang newsurvivalmodelbasedonferroptosisrelatedgenesforprognosticpredictioninclearcellrenalcellcarcinoma |