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Short-term forecasts and long-term mitigation evaluations for the COVID-19 epidemic in Hubei Province, China

As an emerging infectious disease, the 2019 coronavirus disease (COVID-19) has developed into a global pandemic. During the initial spreading of the virus in China, we demonstrated the ensemble Kalman filter performed well as a short-term predictor of the daily cases reported in Wuhan City. Second,...

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Autores principales: Yang, Qihui, Yi, Chunlin, Vajdi, Aram, Cohnstaedt, Lee W., Wu, Hongyu, Guo, Xiaolong, Scoglio, Caterina M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: KeAi Publishing 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7425645/
https://www.ncbi.nlm.nih.gov/pubmed/32835146
http://dx.doi.org/10.1016/j.idm.2020.08.001
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author Yang, Qihui
Yi, Chunlin
Vajdi, Aram
Cohnstaedt, Lee W.
Wu, Hongyu
Guo, Xiaolong
Scoglio, Caterina M.
author_facet Yang, Qihui
Yi, Chunlin
Vajdi, Aram
Cohnstaedt, Lee W.
Wu, Hongyu
Guo, Xiaolong
Scoglio, Caterina M.
author_sort Yang, Qihui
collection PubMed
description As an emerging infectious disease, the 2019 coronavirus disease (COVID-19) has developed into a global pandemic. During the initial spreading of the virus in China, we demonstrated the ensemble Kalman filter performed well as a short-term predictor of the daily cases reported in Wuhan City. Second, we used an individual-level network-based model to reconstruct the epidemic dynamics in Hubei Province and examine the effectiveness of non-pharmaceutical interventions on the epidemic spreading with various scenarios. Our simulation results show that without continued control measures, the epidemic in Hubei Province could have become persistent. Only by continuing to decrease the infection rate through 1) protective measures and 2) social distancing can the actual epidemic trajectory that happened in Hubei Province be reconstructed in simulation. Finally, we simulate the COVID-19 transmission with non-Markovian processes and show how these models produce different epidemic trajectories, compared to those obtained with Markov processes. Since recent studies show that COVID-19 epidemiological parameters do not follow exponential distributions leading to Markov processes, future works need to focus on non-Markovian models to better capture the COVID-19 spreading trajectories. In addition, shortening the infectious period via early case identification and isolation can slow the epidemic spreading significantly.
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spelling pubmed-74256452020-08-14 Short-term forecasts and long-term mitigation evaluations for the COVID-19 epidemic in Hubei Province, China Yang, Qihui Yi, Chunlin Vajdi, Aram Cohnstaedt, Lee W. Wu, Hongyu Guo, Xiaolong Scoglio, Caterina M. Infect Dis Model Special issue on Modelling and Forecasting the 2019 Novel Coronavirus (2019-nCoV) Transmission; Edited by Prof. Carlos Castillo-Chavez, Prof. Gerardo Chowell-Puente, Prof. Ping Yan, Prof. Jianhong Wu As an emerging infectious disease, the 2019 coronavirus disease (COVID-19) has developed into a global pandemic. During the initial spreading of the virus in China, we demonstrated the ensemble Kalman filter performed well as a short-term predictor of the daily cases reported in Wuhan City. Second, we used an individual-level network-based model to reconstruct the epidemic dynamics in Hubei Province and examine the effectiveness of non-pharmaceutical interventions on the epidemic spreading with various scenarios. Our simulation results show that without continued control measures, the epidemic in Hubei Province could have become persistent. Only by continuing to decrease the infection rate through 1) protective measures and 2) social distancing can the actual epidemic trajectory that happened in Hubei Province be reconstructed in simulation. Finally, we simulate the COVID-19 transmission with non-Markovian processes and show how these models produce different epidemic trajectories, compared to those obtained with Markov processes. Since recent studies show that COVID-19 epidemiological parameters do not follow exponential distributions leading to Markov processes, future works need to focus on non-Markovian models to better capture the COVID-19 spreading trajectories. In addition, shortening the infectious period via early case identification and isolation can slow the epidemic spreading significantly. KeAi Publishing 2020-08-13 /pmc/articles/PMC7425645/ /pubmed/32835146 http://dx.doi.org/10.1016/j.idm.2020.08.001 Text en © 2020 The Authors http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Special issue on Modelling and Forecasting the 2019 Novel Coronavirus (2019-nCoV) Transmission; Edited by Prof. Carlos Castillo-Chavez, Prof. Gerardo Chowell-Puente, Prof. Ping Yan, Prof. Jianhong Wu
Yang, Qihui
Yi, Chunlin
Vajdi, Aram
Cohnstaedt, Lee W.
Wu, Hongyu
Guo, Xiaolong
Scoglio, Caterina M.
Short-term forecasts and long-term mitigation evaluations for the COVID-19 epidemic in Hubei Province, China
title Short-term forecasts and long-term mitigation evaluations for the COVID-19 epidemic in Hubei Province, China
title_full Short-term forecasts and long-term mitigation evaluations for the COVID-19 epidemic in Hubei Province, China
title_fullStr Short-term forecasts and long-term mitigation evaluations for the COVID-19 epidemic in Hubei Province, China
title_full_unstemmed Short-term forecasts and long-term mitigation evaluations for the COVID-19 epidemic in Hubei Province, China
title_short Short-term forecasts and long-term mitigation evaluations for the COVID-19 epidemic in Hubei Province, China
title_sort short-term forecasts and long-term mitigation evaluations for the covid-19 epidemic in hubei province, china
topic Special issue on Modelling and Forecasting the 2019 Novel Coronavirus (2019-nCoV) Transmission; Edited by Prof. Carlos Castillo-Chavez, Prof. Gerardo Chowell-Puente, Prof. Ping Yan, Prof. Jianhong Wu
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7425645/
https://www.ncbi.nlm.nih.gov/pubmed/32835146
http://dx.doi.org/10.1016/j.idm.2020.08.001
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