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Updating the taxonomy of Aspergillus in South Africa
The taxonomy and nomenclature of the genus Aspergillus and its associated sexual (teleomorphic) genera have been greatly stabilised over the last decade. This was in large thanks to the accepted species list published in 2014 and associated metadata such as DNA reference sequences released at the ti...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Westerdijk Fungal Biodiversity Institute
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7426233/ https://www.ncbi.nlm.nih.gov/pubmed/32855741 http://dx.doi.org/10.1016/j.simyco.2020.02.003 |
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author | Visagie, C.M. Houbraken, J. |
author_facet | Visagie, C.M. Houbraken, J. |
author_sort | Visagie, C.M. |
collection | PubMed |
description | The taxonomy and nomenclature of the genus Aspergillus and its associated sexual (teleomorphic) genera have been greatly stabilised over the last decade. This was in large thanks to the accepted species list published in 2014 and associated metadata such as DNA reference sequences released at the time. It had a great impact on the community and it has never been easier to identify, publish and describe the missing Aspergillus diversity. To further stabilise its taxonomy, it is crucial to not only discover and publish new species but also to capture infraspecies variation in the form of DNA sequences. This data will help to better characterise and distinguish existing species and make future identifications more robust. South Africa has diverse fungal communities but remains largely unexplored in terms of Aspergillus with very few sequences available for local strains. In this paper, we re-identify Aspergillus previously accessioned in the PPRI and MRC culture collections using modern taxonomic approaches. In the process, we re-identify strains to 63 species, describe seven new species and release a large number of new DNA reference sequences. |
format | Online Article Text |
id | pubmed-7426233 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Westerdijk Fungal Biodiversity Institute |
record_format | MEDLINE/PubMed |
spelling | pubmed-74262332020-08-26 Updating the taxonomy of Aspergillus in South Africa Visagie, C.M. Houbraken, J. Stud Mycol Article The taxonomy and nomenclature of the genus Aspergillus and its associated sexual (teleomorphic) genera have been greatly stabilised over the last decade. This was in large thanks to the accepted species list published in 2014 and associated metadata such as DNA reference sequences released at the time. It had a great impact on the community and it has never been easier to identify, publish and describe the missing Aspergillus diversity. To further stabilise its taxonomy, it is crucial to not only discover and publish new species but also to capture infraspecies variation in the form of DNA sequences. This data will help to better characterise and distinguish existing species and make future identifications more robust. South Africa has diverse fungal communities but remains largely unexplored in terms of Aspergillus with very few sequences available for local strains. In this paper, we re-identify Aspergillus previously accessioned in the PPRI and MRC culture collections using modern taxonomic approaches. In the process, we re-identify strains to 63 species, describe seven new species and release a large number of new DNA reference sequences. Westerdijk Fungal Biodiversity Institute 2020-03-13 /pmc/articles/PMC7426233/ /pubmed/32855741 http://dx.doi.org/10.1016/j.simyco.2020.02.003 Text en © 2020 The Authors https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Article Visagie, C.M. Houbraken, J. Updating the taxonomy of Aspergillus in South Africa |
title | Updating the taxonomy of Aspergillus in South Africa |
title_full | Updating the taxonomy of Aspergillus in South Africa |
title_fullStr | Updating the taxonomy of Aspergillus in South Africa |
title_full_unstemmed | Updating the taxonomy of Aspergillus in South Africa |
title_short | Updating the taxonomy of Aspergillus in South Africa |
title_sort | updating the taxonomy of aspergillus in south africa |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7426233/ https://www.ncbi.nlm.nih.gov/pubmed/32855741 http://dx.doi.org/10.1016/j.simyco.2020.02.003 |
work_keys_str_mv | AT visagiecm updatingthetaxonomyofaspergillusinsouthafrica AT houbrakenj updatingthetaxonomyofaspergillusinsouthafrica |