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Understanding the diversity of the metal-organic framework ecosystem
Millions of distinct metal-organic frameworks (MOFs) can be made by combining metal nodes and organic linkers. At present, over 90,000 MOFs have been synthesized and over 500,000 predicted. This raises the question whether a new experimental or predicted structure adds new information. For MOF chemi...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7426948/ https://www.ncbi.nlm.nih.gov/pubmed/32792486 http://dx.doi.org/10.1038/s41467-020-17755-8 |
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author | Moosavi, Seyed Mohamad Nandy, Aditya Jablonka, Kevin Maik Ongari, Daniele Janet, Jon Paul Boyd, Peter G. Lee, Yongjin Smit, Berend Kulik, Heather J. |
author_facet | Moosavi, Seyed Mohamad Nandy, Aditya Jablonka, Kevin Maik Ongari, Daniele Janet, Jon Paul Boyd, Peter G. Lee, Yongjin Smit, Berend Kulik, Heather J. |
author_sort | Moosavi, Seyed Mohamad |
collection | PubMed |
description | Millions of distinct metal-organic frameworks (MOFs) can be made by combining metal nodes and organic linkers. At present, over 90,000 MOFs have been synthesized and over 500,000 predicted. This raises the question whether a new experimental or predicted structure adds new information. For MOF chemists, the chemical design space is a combination of pore geometry, metal nodes, organic linkers, and functional groups, but at present we do not have a formalism to quantify optimal coverage of chemical design space. In this work, we develop a machine learning method to quantify similarities of MOFs to analyse their chemical diversity. This diversity analysis identifies biases in the databases, and we show that such bias can lead to incorrect conclusions. The developed formalism in this study provides a simple and practical guideline to see whether new structures will have the potential for new insights, or constitute a relatively small variation of existing structures. |
format | Online Article Text |
id | pubmed-7426948 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-74269482020-08-18 Understanding the diversity of the metal-organic framework ecosystem Moosavi, Seyed Mohamad Nandy, Aditya Jablonka, Kevin Maik Ongari, Daniele Janet, Jon Paul Boyd, Peter G. Lee, Yongjin Smit, Berend Kulik, Heather J. Nat Commun Article Millions of distinct metal-organic frameworks (MOFs) can be made by combining metal nodes and organic linkers. At present, over 90,000 MOFs have been synthesized and over 500,000 predicted. This raises the question whether a new experimental or predicted structure adds new information. For MOF chemists, the chemical design space is a combination of pore geometry, metal nodes, organic linkers, and functional groups, but at present we do not have a formalism to quantify optimal coverage of chemical design space. In this work, we develop a machine learning method to quantify similarities of MOFs to analyse their chemical diversity. This diversity analysis identifies biases in the databases, and we show that such bias can lead to incorrect conclusions. The developed formalism in this study provides a simple and practical guideline to see whether new structures will have the potential for new insights, or constitute a relatively small variation of existing structures. Nature Publishing Group UK 2020-08-13 /pmc/articles/PMC7426948/ /pubmed/32792486 http://dx.doi.org/10.1038/s41467-020-17755-8 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Moosavi, Seyed Mohamad Nandy, Aditya Jablonka, Kevin Maik Ongari, Daniele Janet, Jon Paul Boyd, Peter G. Lee, Yongjin Smit, Berend Kulik, Heather J. Understanding the diversity of the metal-organic framework ecosystem |
title | Understanding the diversity of the metal-organic framework ecosystem |
title_full | Understanding the diversity of the metal-organic framework ecosystem |
title_fullStr | Understanding the diversity of the metal-organic framework ecosystem |
title_full_unstemmed | Understanding the diversity of the metal-organic framework ecosystem |
title_short | Understanding the diversity of the metal-organic framework ecosystem |
title_sort | understanding the diversity of the metal-organic framework ecosystem |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7426948/ https://www.ncbi.nlm.nih.gov/pubmed/32792486 http://dx.doi.org/10.1038/s41467-020-17755-8 |
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