Cargando…

Amyloidogenic Propensities of Ribosomal S1 Proteins: Bioinformatics Screening and Experimental Checking

Structural S1 domains belong to the superfamily of oligosaccharide/oligonucleotide-binding fold domains, which are highly conserved from prokaryotes to higher eukaryotes and able to function in RNA binding. An important feature of this family is the presence of several copies of the structural domai...

Descripción completa

Detalles Bibliográficos
Autores principales:	Grishin, Sergei Y., Deryusheva, Evgeniya I., Machulin, Andrey V., Selivanova, Olga M., Glyakina, Anna V., Gorbunova, Elena Y., Mustaeva, Leila G., Azev, Vyacheslav N., Rekstina, Valentina V., Kalebina, Tatyana S., Surin, Alexey K., Galzitskaya, Oxana V.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	MDPI 2020
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7432502/ https://www.ncbi.nlm.nih.gov/pubmed/32707977 http://dx.doi.org/10.3390/ijms21155199

Ejemplares similares

Mechanism of Amyloid Gel Formation by Several Short Amyloidogenic Peptides
por: Galzitskaya, Oxana V., et al.
Publicado: (2021)

Antimicrobial and Amyloidogenic Activity of Peptides Synthesized on the Basis of the Ribosomal S1 Protein from Thermus Thermophilus
por: Kurpe, Stanislav R., et al.
Publicado: (2020)

Amyloidogenic Peptides: New Class of Antimicrobial Peptides with the Novel Mechanism of Activity
por: Galzitskaya, Oxana V., et al.
Publicado: (2022)

Identification of Amyloidogenic Regions in Pseudomonas aeruginosa Ribosomal S1 Protein
por: Grishin, Sergei Y., et al.
Publicado: (2021)

Is It Possible to Create Antimicrobial Peptides Based on the Amyloidogenic Sequence of Ribosomal S1 Protein of P. aeruginosa?
por: Grishin, Sergei Y., et al.
Publicado: (2021)

Multiple Antimicrobial Effects of Hybrid Peptides Synthesized Based on the Sequence of Ribosomal S1 Protein from Staphylococcus aureus
por: Kravchenko, Sergey V., et al.
Publicado: (2022)

The number of domains in the ribosomal protein S1 as a hallmark of the phylogenetic grouping of bacteria
por: Machulin, Andrey V., et al.
Publicado: (2019)

Exploring Amyloidogenicity of Peptides From Ribosomal S1 Protein to Develop Novel AMPs
por: Galzitskaya, Oxana V.
Publicado: (2021)

Dataset of the molecular dynamics simulations of bilayers consisting of short amyloidogenic peptide VDSWNVLVAG from Bgl2p–glucantransferase of S. cerevisiae cell wall
por: Glyakina, Anna V., et al.
Publicado: (2016)

Should the Treatment of Amyloidosis Be Personified? Molecular Mechanism of Amyloid Formation by Aβ Peptide and Its Fragments
por: Galzitskaya, Oxana V., et al.
Publicado: (2018)

Antimicrobial and Amyloidogenic Activity of Peptides. Can Antimicrobial Peptides Be Used against SARS-CoV-2?
por: Kurpe, Stanislav R., et al.
Publicado: (2020)

Investigation of the Relationship between the S1 Domain and Its Molecular Functions Derived from Studies of the Tertiary Structure
por: Deryusheva, Evgenia I., et al.
Publicado: (2019)

The Strategies of Development of New Non-Toxic Inhibitors of Amyloid Formation
por: Galzitskaya, Oxana V., et al.
Publicado: (2023)

New Model for Stacking Monomers in Filamentous Actin from Skeletal Muscles of Oryctolagus cuniculus
por: Glyakina, Anna V., et al.
Publicado: (2020)

The Increased Amyloidogenicity of Spike RBD and pH-Dependent Binding to ACE2 May Contribute to the Transmissibility and Pathogenic Properties of SARS-CoV-2 Omicron as Suggested by In Silico Study
por: Aksenova, Anna Y., et al.
Publicado: (2022)

Repeats in S1 Proteins: Flexibility and Tendency for Intrinsic Disorder
por: Machulin, Andrey, et al.
Publicado: (2019)

Prediction of Amyloidogenic and Disordered Regions in Protein Chains
por: Galzitskaya, Oxana V, et al.
Publicado: (2006)

How Quickly Do Proteins Fold and Unfold, and What Structural Parameters Correlate with These Values?
por: Glyakina, Anna V., et al.
Publicado: (2020)

Bioinformatics Analysis of Actin Molecules: Why Quantity Does Not Translate Into Quality?
por: Glyakina, Anna V., et al.
Publicado: (2020)

Accessible Surfaces of Beta Proteins Increase with Increasing Protein Molecular Mass More Rapidly than Those of Other Proteins
por: Glyakina, Anna V., et al.
Publicado: (2011)

Determination of amyloid core regions of insulin analogues fibrils
por: Surin, Alexey K., et al.
Publicado: (2020)

Multiple Unfolding Intermediates Obtained by Molecular Dynamic Simulations under Stretching for Immunoglobulin-Binding Domain of Protein G
por: Glyakina, Anna V, et al.
Publicado: (2009)

Structural and Functional Peculiarities of α-Crystallin
por: Selivanova, Olga M., et al.
Publicado: (2020)

Search for Structural Basis of Interactions of Biogenic Amines with Human TAAR1 and TAAR6 Receptors
por: Glyakina, Anna V., et al.
Publicado: (2021)

X-ray diffraction and electron microscopy data for amyloid formation of Aβ40 and Aβ42
por: Selivanova, Olga M., et al.
Publicado: (2016)

The Post-Translational Modifications, Localization, and Mode of Attachment of Non-Covalently Bound Glucanosyltransglycosylases of Yeast Cell Wall as a Key to Understanding their Functioning
por: Rekstina, Valentina V., et al.
Publicado: (2020)

Regions which are Responsible for Swapping are also Responsible for Folding and Misfolding
por: Galzitskaya, Oxana V
Publicado: (2011)

Oligomers Are Promising Targets for Drug Development in the Treatment of Proteinopathies
por: Galzitskaya, Oxana V.
Publicado: (2020)

Creation of New Antimicrobial Peptides
por: Galzitskaya, Oxana V.
Publicado: (2023)

Prediction of Residue Status to Be Protected or Not Protected From Hy-drogen Exchange Using Amino Acid Sequence Only
por: Dovidchenko, Nikita V, et al.
Publicado: (2008)

Comparative Analysis of Proteomes of a Number of Nosocomial Pathogens by KEGG Modules and KEGG Pathways
por: Slizen, Mikhail V., et al.
Publicado: (2020)

Extended disordered regions of ribosome-associated NAC proteins paralogs belong only to the germline in Drosophila melanogaster
por: Kogan, Galina L., et al.
Publicado: (2022)

Expression of a Stilbene Synthase Gene from the Vitis labrusca x Vitis vinifera L. Hybrid Increases the Resistance of Transgenic Nicotiana tabacum L. Plants to Erwinia carotovora
por: Rukavtsova, Elena B., et al.
Publicado: (2022)

Heparin-Induced Changes of Vascular Endothelial Growth Factor (VEGF(165)) Structure
por: Nemashkalova, Ekaterina L., et al.
Publicado: (2023)

First Report of Lysozyme Amyloidosis with p.F21L/T88N Amino Acid Substitutions in a Russian Family
por: Suvorina, Mariya Yu., et al.
Publicado: (2023)

Disordered Patterns in Clustered Protein Data Bank and in Eukaryotic and Bacterial Proteomes
por: Lobanov, Michail Yu., et al.
Publicado: (2011)

How Common Is Disorder? Occurrence of Disordered Residues in Four Domains of Life
por: Lobanov, Mikhail Yu., et al.
Publicado: (2015)

HRaP: database of occurrence of HomoRepeats and patterns in proteomes
por: Lobanov, Mikhail Yu., et al.
Publicado: (2014)

Disordered Residues and Patterns in the Protein Data Bank
por: Lobanov, Mikhail Yu., et al.
Publicado: (2020)

Is It Possible to Find an Antimicrobial Peptide That Passes the Membrane Bilayer with Minimal Force Resistance? An Attempt at a Predictive Approach by Molecular Dynamics Simulation
por: Likhachev, Ilya V., et al.
Publicado: (2022)

Cannot write session to /tmp/vufind_sessions/sess_t66643h8r35i8nauavpnvnh5tf