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Initial data release and announcement of the 10,000 Fish Genomes Project (Fish10K)
BACKGROUND: With more than 30,000 species, fish—including bony, jawless, and cartilaginous fish—are the largest vertebrate group, and include some of the earliest vertebrates. Despite their critical roles in many ecosystems and human society, fish genomics lags behind work on birds and mammals. This...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7433795/ https://www.ncbi.nlm.nih.gov/pubmed/32810278 http://dx.doi.org/10.1093/gigascience/giaa080 |
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author | Fan, Guangyi Song, Yue Yang, Liandong Huang, Xiaoyun Zhang, Suyu Zhang, Mengqi Yang, Xianwei Chang, Yue Zhang, He Li, Yongxin Liu, Shanshan Yu, Lili Chu, Jeffery Seim, Inge Feng, Chenguang Near, Thomas J Wing, Rod A Wang, Wen Wang, Kun Wang, Jing Xu, Xun Yang, Huanming Liu, Xin Chen, Nansheng He, Shunping |
author_facet | Fan, Guangyi Song, Yue Yang, Liandong Huang, Xiaoyun Zhang, Suyu Zhang, Mengqi Yang, Xianwei Chang, Yue Zhang, He Li, Yongxin Liu, Shanshan Yu, Lili Chu, Jeffery Seim, Inge Feng, Chenguang Near, Thomas J Wing, Rod A Wang, Wen Wang, Kun Wang, Jing Xu, Xun Yang, Huanming Liu, Xin Chen, Nansheng He, Shunping |
author_sort | Fan, Guangyi |
collection | PubMed |
description | BACKGROUND: With more than 30,000 species, fish—including bony, jawless, and cartilaginous fish—are the largest vertebrate group, and include some of the earliest vertebrates. Despite their critical roles in many ecosystems and human society, fish genomics lags behind work on birds and mammals. This severely limits our understanding of evolution and hinders progress on the conservation and sustainable utilization of fish. RESULTS: Here, we announce the Fish10K project, a portion of the Earth BioGenome Project aiming to sequence 10,000 representative fish genomes in a systematic fashion within 10 years, and we officially welcome collaborators to join this effort. As a step towards this goal, we herein describe a feasible workflow for the procurement and storage of biospecimens, as well as sequencing and assembly strategies. CONCLUSIONS: To illustrate, we present the genomes of 10 fish species from a cohort of 93 species chosen for technology development. |
format | Online Article Text |
id | pubmed-7433795 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-74337952020-08-20 Initial data release and announcement of the 10,000 Fish Genomes Project (Fish10K) Fan, Guangyi Song, Yue Yang, Liandong Huang, Xiaoyun Zhang, Suyu Zhang, Mengqi Yang, Xianwei Chang, Yue Zhang, He Li, Yongxin Liu, Shanshan Yu, Lili Chu, Jeffery Seim, Inge Feng, Chenguang Near, Thomas J Wing, Rod A Wang, Wen Wang, Kun Wang, Jing Xu, Xun Yang, Huanming Liu, Xin Chen, Nansheng He, Shunping Gigascience Data Note BACKGROUND: With more than 30,000 species, fish—including bony, jawless, and cartilaginous fish—are the largest vertebrate group, and include some of the earliest vertebrates. Despite their critical roles in many ecosystems and human society, fish genomics lags behind work on birds and mammals. This severely limits our understanding of evolution and hinders progress on the conservation and sustainable utilization of fish. RESULTS: Here, we announce the Fish10K project, a portion of the Earth BioGenome Project aiming to sequence 10,000 representative fish genomes in a systematic fashion within 10 years, and we officially welcome collaborators to join this effort. As a step towards this goal, we herein describe a feasible workflow for the procurement and storage of biospecimens, as well as sequencing and assembly strategies. CONCLUSIONS: To illustrate, we present the genomes of 10 fish species from a cohort of 93 species chosen for technology development. Oxford University Press 2020-08-18 /pmc/articles/PMC7433795/ /pubmed/32810278 http://dx.doi.org/10.1093/gigascience/giaa080 Text en © The Author(s) 2020. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Data Note Fan, Guangyi Song, Yue Yang, Liandong Huang, Xiaoyun Zhang, Suyu Zhang, Mengqi Yang, Xianwei Chang, Yue Zhang, He Li, Yongxin Liu, Shanshan Yu, Lili Chu, Jeffery Seim, Inge Feng, Chenguang Near, Thomas J Wing, Rod A Wang, Wen Wang, Kun Wang, Jing Xu, Xun Yang, Huanming Liu, Xin Chen, Nansheng He, Shunping Initial data release and announcement of the 10,000 Fish Genomes Project (Fish10K) |
title | Initial data release and announcement of the 10,000 Fish Genomes Project (Fish10K) |
title_full | Initial data release and announcement of the 10,000 Fish Genomes Project (Fish10K) |
title_fullStr | Initial data release and announcement of the 10,000 Fish Genomes Project (Fish10K) |
title_full_unstemmed | Initial data release and announcement of the 10,000 Fish Genomes Project (Fish10K) |
title_short | Initial data release and announcement of the 10,000 Fish Genomes Project (Fish10K) |
title_sort | initial data release and announcement of the 10,000 fish genomes project (fish10k) |
topic | Data Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7433795/ https://www.ncbi.nlm.nih.gov/pubmed/32810278 http://dx.doi.org/10.1093/gigascience/giaa080 |
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