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Initial data release and announcement of the 10,000 Fish Genomes Project (Fish10K)

BACKGROUND: With more than 30,000 species, fish—including bony, jawless, and cartilaginous fish—are the largest vertebrate group, and include some of the earliest vertebrates. Despite their critical roles in many ecosystems and human society, fish genomics lags behind work on birds and mammals. This...

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Detalles Bibliográficos
Autores principales: Fan, Guangyi, Song, Yue, Yang, Liandong, Huang, Xiaoyun, Zhang, Suyu, Zhang, Mengqi, Yang, Xianwei, Chang, Yue, Zhang, He, Li, Yongxin, Liu, Shanshan, Yu, Lili, Chu, Jeffery, Seim, Inge, Feng, Chenguang, Near, Thomas J, Wing, Rod A, Wang, Wen, Wang, Kun, Wang, Jing, Xu, Xun, Yang, Huanming, Liu, Xin, Chen, Nansheng, He, Shunping
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7433795/
https://www.ncbi.nlm.nih.gov/pubmed/32810278
http://dx.doi.org/10.1093/gigascience/giaa080
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author Fan, Guangyi
Song, Yue
Yang, Liandong
Huang, Xiaoyun
Zhang, Suyu
Zhang, Mengqi
Yang, Xianwei
Chang, Yue
Zhang, He
Li, Yongxin
Liu, Shanshan
Yu, Lili
Chu, Jeffery
Seim, Inge
Feng, Chenguang
Near, Thomas J
Wing, Rod A
Wang, Wen
Wang, Kun
Wang, Jing
Xu, Xun
Yang, Huanming
Liu, Xin
Chen, Nansheng
He, Shunping
author_facet Fan, Guangyi
Song, Yue
Yang, Liandong
Huang, Xiaoyun
Zhang, Suyu
Zhang, Mengqi
Yang, Xianwei
Chang, Yue
Zhang, He
Li, Yongxin
Liu, Shanshan
Yu, Lili
Chu, Jeffery
Seim, Inge
Feng, Chenguang
Near, Thomas J
Wing, Rod A
Wang, Wen
Wang, Kun
Wang, Jing
Xu, Xun
Yang, Huanming
Liu, Xin
Chen, Nansheng
He, Shunping
author_sort Fan, Guangyi
collection PubMed
description BACKGROUND: With more than 30,000 species, fish—including bony, jawless, and cartilaginous fish—are the largest vertebrate group, and include some of the earliest vertebrates. Despite their critical roles in many ecosystems and human society, fish genomics lags behind work on birds and mammals. This severely limits our understanding of evolution and hinders progress on the conservation and sustainable utilization of fish. RESULTS: Here, we announce the Fish10K project, a portion of the Earth BioGenome Project aiming to sequence 10,000 representative fish genomes in a systematic fashion within 10 years, and we officially welcome collaborators to join this effort. As a step towards this goal, we herein describe a feasible workflow for the procurement and storage of biospecimens, as well as sequencing and assembly strategies. CONCLUSIONS: To illustrate, we present the genomes of 10 fish species from a cohort of 93 species chosen for technology development.
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spelling pubmed-74337952020-08-20 Initial data release and announcement of the 10,000 Fish Genomes Project (Fish10K) Fan, Guangyi Song, Yue Yang, Liandong Huang, Xiaoyun Zhang, Suyu Zhang, Mengqi Yang, Xianwei Chang, Yue Zhang, He Li, Yongxin Liu, Shanshan Yu, Lili Chu, Jeffery Seim, Inge Feng, Chenguang Near, Thomas J Wing, Rod A Wang, Wen Wang, Kun Wang, Jing Xu, Xun Yang, Huanming Liu, Xin Chen, Nansheng He, Shunping Gigascience Data Note BACKGROUND: With more than 30,000 species, fish—including bony, jawless, and cartilaginous fish—are the largest vertebrate group, and include some of the earliest vertebrates. Despite their critical roles in many ecosystems and human society, fish genomics lags behind work on birds and mammals. This severely limits our understanding of evolution and hinders progress on the conservation and sustainable utilization of fish. RESULTS: Here, we announce the Fish10K project, a portion of the Earth BioGenome Project aiming to sequence 10,000 representative fish genomes in a systematic fashion within 10 years, and we officially welcome collaborators to join this effort. As a step towards this goal, we herein describe a feasible workflow for the procurement and storage of biospecimens, as well as sequencing and assembly strategies. CONCLUSIONS: To illustrate, we present the genomes of 10 fish species from a cohort of 93 species chosen for technology development. Oxford University Press 2020-08-18 /pmc/articles/PMC7433795/ /pubmed/32810278 http://dx.doi.org/10.1093/gigascience/giaa080 Text en © The Author(s) 2020. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Data Note
Fan, Guangyi
Song, Yue
Yang, Liandong
Huang, Xiaoyun
Zhang, Suyu
Zhang, Mengqi
Yang, Xianwei
Chang, Yue
Zhang, He
Li, Yongxin
Liu, Shanshan
Yu, Lili
Chu, Jeffery
Seim, Inge
Feng, Chenguang
Near, Thomas J
Wing, Rod A
Wang, Wen
Wang, Kun
Wang, Jing
Xu, Xun
Yang, Huanming
Liu, Xin
Chen, Nansheng
He, Shunping
Initial data release and announcement of the 10,000 Fish Genomes Project (Fish10K)
title Initial data release and announcement of the 10,000 Fish Genomes Project (Fish10K)
title_full Initial data release and announcement of the 10,000 Fish Genomes Project (Fish10K)
title_fullStr Initial data release and announcement of the 10,000 Fish Genomes Project (Fish10K)
title_full_unstemmed Initial data release and announcement of the 10,000 Fish Genomes Project (Fish10K)
title_short Initial data release and announcement of the 10,000 Fish Genomes Project (Fish10K)
title_sort initial data release and announcement of the 10,000 fish genomes project (fish10k)
topic Data Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7433795/
https://www.ncbi.nlm.nih.gov/pubmed/32810278
http://dx.doi.org/10.1093/gigascience/giaa080
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