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Whole‐exome sequencing and genome‐wide association studies identify novel sarcopenia risk genes in Han Chinese

Sarcopenia is a complex polygenic disease, and its molecular mechanism is still unclear. Whole lean body mass (WLBM) is a heritable trait predicting sarcopenia. To identify genomic loci underlying, we performed a whole‐exome sequencing (WES) of WLBM variation with high sequencing depth (more than 40...

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Autores principales: Ran, Shu, He, Xiao, Jiang, Zi‐Xuan, Liu, Yu, Zhang, Yu‐Xue, Zhang, Lei, Gu, Gui‐Shan, Pei, Yufang, Liu, Bao‐Lin, Tian, Qing, Zhang, Yong‐Hong, Wang, Jing‐Yu, Deng, Hong‐Wen
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7434604/
https://www.ncbi.nlm.nih.gov/pubmed/32478482
http://dx.doi.org/10.1002/mgg3.1267
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author Ran, Shu
He, Xiao
Jiang, Zi‐Xuan
Liu, Yu
Zhang, Yu‐Xue
Zhang, Lei
Gu, Gui‐Shan
Pei, Yufang
Liu, Bao‐Lin
Tian, Qing
Zhang, Yong‐Hong
Wang, Jing‐Yu
Deng, Hong‐Wen
author_facet Ran, Shu
He, Xiao
Jiang, Zi‐Xuan
Liu, Yu
Zhang, Yu‐Xue
Zhang, Lei
Gu, Gui‐Shan
Pei, Yufang
Liu, Bao‐Lin
Tian, Qing
Zhang, Yong‐Hong
Wang, Jing‐Yu
Deng, Hong‐Wen
author_sort Ran, Shu
collection PubMed
description Sarcopenia is a complex polygenic disease, and its molecular mechanism is still unclear. Whole lean body mass (WLBM) is a heritable trait predicting sarcopenia. To identify genomic loci underlying, we performed a whole‐exome sequencing (WES) of WLBM variation with high sequencing depth (more than 40*) in 101 Chinese subjects. We then replicated in the major findings in the large‐scale UK Biobank (UKB) cohort (N = 217,822) for WLBM. The results of four single‐nucleotide polymorphisms (SNPs) were significant both in the discovery stage and replication stage: SNP rs740681 (discovery p = 1.66 × 10(–6), replication p = .05), rs2272303 (discovery p = 3.20 × 10(–4), replication p = 3.10 × 10(–4)), rs11170413 (discovery p = 3.99 × 10(–4), replication p = 2.90 × 10(–4)), and rs2272302 (discovery p = 9.13 × 10(–4), replication p = 3.10 × 10(–4)). We combined p values of the significant SNPs. Functional annotations highlighted two candidate genes, including FZR1 and SOAT2, that may exert pleiotropic effects to the development of body mass. Our findings provide useful insights that further enhance our understanding of genetic interplay in sarcopenia.
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spelling pubmed-74346042020-08-20 Whole‐exome sequencing and genome‐wide association studies identify novel sarcopenia risk genes in Han Chinese Ran, Shu He, Xiao Jiang, Zi‐Xuan Liu, Yu Zhang, Yu‐Xue Zhang, Lei Gu, Gui‐Shan Pei, Yufang Liu, Bao‐Lin Tian, Qing Zhang, Yong‐Hong Wang, Jing‐Yu Deng, Hong‐Wen Mol Genet Genomic Med Original Articles Sarcopenia is a complex polygenic disease, and its molecular mechanism is still unclear. Whole lean body mass (WLBM) is a heritable trait predicting sarcopenia. To identify genomic loci underlying, we performed a whole‐exome sequencing (WES) of WLBM variation with high sequencing depth (more than 40*) in 101 Chinese subjects. We then replicated in the major findings in the large‐scale UK Biobank (UKB) cohort (N = 217,822) for WLBM. The results of four single‐nucleotide polymorphisms (SNPs) were significant both in the discovery stage and replication stage: SNP rs740681 (discovery p = 1.66 × 10(–6), replication p = .05), rs2272303 (discovery p = 3.20 × 10(–4), replication p = 3.10 × 10(–4)), rs11170413 (discovery p = 3.99 × 10(–4), replication p = 2.90 × 10(–4)), and rs2272302 (discovery p = 9.13 × 10(–4), replication p = 3.10 × 10(–4)). We combined p values of the significant SNPs. Functional annotations highlighted two candidate genes, including FZR1 and SOAT2, that may exert pleiotropic effects to the development of body mass. Our findings provide useful insights that further enhance our understanding of genetic interplay in sarcopenia. John Wiley and Sons Inc. 2020-06-01 /pmc/articles/PMC7434604/ /pubmed/32478482 http://dx.doi.org/10.1002/mgg3.1267 Text en © 2020 The Authors. Molecular Genetics & Genomic Medicine published by Wiley Periodicals, LLC. This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.
spellingShingle Original Articles
Ran, Shu
He, Xiao
Jiang, Zi‐Xuan
Liu, Yu
Zhang, Yu‐Xue
Zhang, Lei
Gu, Gui‐Shan
Pei, Yufang
Liu, Bao‐Lin
Tian, Qing
Zhang, Yong‐Hong
Wang, Jing‐Yu
Deng, Hong‐Wen
Whole‐exome sequencing and genome‐wide association studies identify novel sarcopenia risk genes in Han Chinese
title Whole‐exome sequencing and genome‐wide association studies identify novel sarcopenia risk genes in Han Chinese
title_full Whole‐exome sequencing and genome‐wide association studies identify novel sarcopenia risk genes in Han Chinese
title_fullStr Whole‐exome sequencing and genome‐wide association studies identify novel sarcopenia risk genes in Han Chinese
title_full_unstemmed Whole‐exome sequencing and genome‐wide association studies identify novel sarcopenia risk genes in Han Chinese
title_short Whole‐exome sequencing and genome‐wide association studies identify novel sarcopenia risk genes in Han Chinese
title_sort whole‐exome sequencing and genome‐wide association studies identify novel sarcopenia risk genes in han chinese
topic Original Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7434604/
https://www.ncbi.nlm.nih.gov/pubmed/32478482
http://dx.doi.org/10.1002/mgg3.1267
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