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Missense mutations in SARS-CoV2 genomes from Indian patients

The genetic diversity of the severe acute respiratory syndrome coronavirus-2 (SARS-CoV2) in several countries sums up to worldwide genetic diversity. In this present study, variations in terms of missense mutations among the SARS-CoV2 genomes from 128 Indian patients, as of May 2020, are accounted a...

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Autores principales: Hassan, Sk. Sarif, Choudhury, Pabitra Pal, Roy, Bidyut, Jana, Siddhartha Sankar
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier Inc. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7434617/
https://www.ncbi.nlm.nih.gov/pubmed/32822756
http://dx.doi.org/10.1016/j.ygeno.2020.08.021
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author Hassan, Sk. Sarif
Choudhury, Pabitra Pal
Roy, Bidyut
Jana, Siddhartha Sankar
author_facet Hassan, Sk. Sarif
Choudhury, Pabitra Pal
Roy, Bidyut
Jana, Siddhartha Sankar
author_sort Hassan, Sk. Sarif
collection PubMed
description The genetic diversity of the severe acute respiratory syndrome coronavirus-2 (SARS-CoV2) in several countries sums up to worldwide genetic diversity. In this present study, variations in terms of missense mutations among the SARS-CoV2 genomes from 128 Indian patients, as of May 2020, are accounted and thereby some key findings with some hypotheses were made. These mutations across various genes of these genomes show wide genetic variations in sequence and rapid evolution of SARS-CoV2 virus. The presence of unique mutations in the studied SARS-CoV2 genomes may led to their attenuation. Few Genes such as ORF6, ORF10 are free from any mutations in the Indian context of 339 genomes observed as of 14th July 2020. Further, E protein contains only one mutation. This may suggest that designing a therapeutic approach against ORF6, ORF10 and E genes may have a beneficial effect in controlling COVID-19 pandemic especially in India.
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spelling pubmed-74346172020-08-19 Missense mutations in SARS-CoV2 genomes from Indian patients Hassan, Sk. Sarif Choudhury, Pabitra Pal Roy, Bidyut Jana, Siddhartha Sankar Genomics Short Communication The genetic diversity of the severe acute respiratory syndrome coronavirus-2 (SARS-CoV2) in several countries sums up to worldwide genetic diversity. In this present study, variations in terms of missense mutations among the SARS-CoV2 genomes from 128 Indian patients, as of May 2020, are accounted and thereby some key findings with some hypotheses were made. These mutations across various genes of these genomes show wide genetic variations in sequence and rapid evolution of SARS-CoV2 virus. The presence of unique mutations in the studied SARS-CoV2 genomes may led to their attenuation. Few Genes such as ORF6, ORF10 are free from any mutations in the Indian context of 339 genomes observed as of 14th July 2020. Further, E protein contains only one mutation. This may suggest that designing a therapeutic approach against ORF6, ORF10 and E genes may have a beneficial effect in controlling COVID-19 pandemic especially in India. Elsevier Inc. 2020-11 2020-08-19 /pmc/articles/PMC7434617/ /pubmed/32822756 http://dx.doi.org/10.1016/j.ygeno.2020.08.021 Text en © 2020 Elsevier Inc. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Short Communication
Hassan, Sk. Sarif
Choudhury, Pabitra Pal
Roy, Bidyut
Jana, Siddhartha Sankar
Missense mutations in SARS-CoV2 genomes from Indian patients
title Missense mutations in SARS-CoV2 genomes from Indian patients
title_full Missense mutations in SARS-CoV2 genomes from Indian patients
title_fullStr Missense mutations in SARS-CoV2 genomes from Indian patients
title_full_unstemmed Missense mutations in SARS-CoV2 genomes from Indian patients
title_short Missense mutations in SARS-CoV2 genomes from Indian patients
title_sort missense mutations in sars-cov2 genomes from indian patients
topic Short Communication
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7434617/
https://www.ncbi.nlm.nih.gov/pubmed/32822756
http://dx.doi.org/10.1016/j.ygeno.2020.08.021
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