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Development and Validation of a Novel 8 Immune Gene Prognostic Signature Based on the Immune Expression Profile for Hepatocellular Carcinoma

BACKGROUND: The immune microenvironment plays a vital role in the development of hepatocellular carcinoma (HCC). This study explored novel immune-related biomarkers to predict the prognosis of patients with HCC. METHODS: RNA-Seq data were downloaded from The Cancer Genome Atlas (TCGA). Univariate Co...

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Autores principales: Xu, Dafeng, Wang, Yu, Zhou, Kailun, Wu, Jincai, Zhang, Zhensheng, Zhang, Jiachao, Yu, Zhiwei, Liu, Luzheng, Liu, Xiangmei, Li, Bidan, Zheng, Jinfang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Dove 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7439501/
https://www.ncbi.nlm.nih.gov/pubmed/32884295
http://dx.doi.org/10.2147/OTT.S263047
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author Xu, Dafeng
Wang, Yu
Zhou, Kailun
Wu, Jincai
Zhang, Zhensheng
Zhang, Jiachao
Yu, Zhiwei
Liu, Luzheng
Liu, Xiangmei
Li, Bidan
Zheng, Jinfang
author_facet Xu, Dafeng
Wang, Yu
Zhou, Kailun
Wu, Jincai
Zhang, Zhensheng
Zhang, Jiachao
Yu, Zhiwei
Liu, Luzheng
Liu, Xiangmei
Li, Bidan
Zheng, Jinfang
author_sort Xu, Dafeng
collection PubMed
description BACKGROUND: The immune microenvironment plays a vital role in the development of hepatocellular carcinoma (HCC). This study explored novel immune-related biomarkers to predict the prognosis of patients with HCC. METHODS: RNA-Seq data were downloaded from The Cancer Genome Atlas (TCGA). Univariate Cox regression was used to identify prognosis-related genes; the Lasso method was used to construct the prognosis risk model. Validation was performed on the International Cancer Genome Consortium (ICGC) cohort, and the C-index was calculated to evaluate its overall predictive performance. Western blots were conducted to evaluate the expression of genes. RESULTS: There were 320 immune-related genes, 40 of which were significantly related to prognosis. Eight immune gene signatures (CKLF, IL12A, CCL20, PRELID1, GLMN, ACVR2A, CD7, and FYN) were established by Lasso Cox regression analysis. This immune signature performed well in different cohorts and can be an independent risk factor for prognosis. In addition, the overall predictive performance of this model was higher than the other models reported previously. CONCLUSION: The predictive immune model will enable patients with HCC to be more accurately managed in immunotherapy.
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spelling pubmed-74395012020-09-02 Development and Validation of a Novel 8 Immune Gene Prognostic Signature Based on the Immune Expression Profile for Hepatocellular Carcinoma Xu, Dafeng Wang, Yu Zhou, Kailun Wu, Jincai Zhang, Zhensheng Zhang, Jiachao Yu, Zhiwei Liu, Luzheng Liu, Xiangmei Li, Bidan Zheng, Jinfang Onco Targets Ther Original Research BACKGROUND: The immune microenvironment plays a vital role in the development of hepatocellular carcinoma (HCC). This study explored novel immune-related biomarkers to predict the prognosis of patients with HCC. METHODS: RNA-Seq data were downloaded from The Cancer Genome Atlas (TCGA). Univariate Cox regression was used to identify prognosis-related genes; the Lasso method was used to construct the prognosis risk model. Validation was performed on the International Cancer Genome Consortium (ICGC) cohort, and the C-index was calculated to evaluate its overall predictive performance. Western blots were conducted to evaluate the expression of genes. RESULTS: There were 320 immune-related genes, 40 of which were significantly related to prognosis. Eight immune gene signatures (CKLF, IL12A, CCL20, PRELID1, GLMN, ACVR2A, CD7, and FYN) were established by Lasso Cox regression analysis. This immune signature performed well in different cohorts and can be an independent risk factor for prognosis. In addition, the overall predictive performance of this model was higher than the other models reported previously. CONCLUSION: The predictive immune model will enable patients with HCC to be more accurately managed in immunotherapy. Dove 2020-08-14 /pmc/articles/PMC7439501/ /pubmed/32884295 http://dx.doi.org/10.2147/OTT.S263047 Text en © 2020 Xu et al. http://creativecommons.org/licenses/by-nc/3.0/ This work is published and licensed by Dove Medical Press Limited. The full terms of this license are available at https://www.dovepress.com/terms.php and incorporate the Creative Commons Attribution – Non Commercial (unported, v3.0) License (http://creativecommons.org/licenses/by-nc/3.0/). By accessing the work you hereby accept the Terms. Non-commercial uses of the work are permitted without any further permission from Dove Medical Press Limited, provided the work is properly attributed. For permission for commercial use of this work, please see paragraphs 4.2 and 5 of our Terms (https://www.dovepress.com/terms.php).
spellingShingle Original Research
Xu, Dafeng
Wang, Yu
Zhou, Kailun
Wu, Jincai
Zhang, Zhensheng
Zhang, Jiachao
Yu, Zhiwei
Liu, Luzheng
Liu, Xiangmei
Li, Bidan
Zheng, Jinfang
Development and Validation of a Novel 8 Immune Gene Prognostic Signature Based on the Immune Expression Profile for Hepatocellular Carcinoma
title Development and Validation of a Novel 8 Immune Gene Prognostic Signature Based on the Immune Expression Profile for Hepatocellular Carcinoma
title_full Development and Validation of a Novel 8 Immune Gene Prognostic Signature Based on the Immune Expression Profile for Hepatocellular Carcinoma
title_fullStr Development and Validation of a Novel 8 Immune Gene Prognostic Signature Based on the Immune Expression Profile for Hepatocellular Carcinoma
title_full_unstemmed Development and Validation of a Novel 8 Immune Gene Prognostic Signature Based on the Immune Expression Profile for Hepatocellular Carcinoma
title_short Development and Validation of a Novel 8 Immune Gene Prognostic Signature Based on the Immune Expression Profile for Hepatocellular Carcinoma
title_sort development and validation of a novel 8 immune gene prognostic signature based on the immune expression profile for hepatocellular carcinoma
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7439501/
https://www.ncbi.nlm.nih.gov/pubmed/32884295
http://dx.doi.org/10.2147/OTT.S263047
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