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Development and Validation of a Novel 8 Immune Gene Prognostic Signature Based on the Immune Expression Profile for Hepatocellular Carcinoma
BACKGROUND: The immune microenvironment plays a vital role in the development of hepatocellular carcinoma (HCC). This study explored novel immune-related biomarkers to predict the prognosis of patients with HCC. METHODS: RNA-Seq data were downloaded from The Cancer Genome Atlas (TCGA). Univariate Co...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Dove
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7439501/ https://www.ncbi.nlm.nih.gov/pubmed/32884295 http://dx.doi.org/10.2147/OTT.S263047 |
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author | Xu, Dafeng Wang, Yu Zhou, Kailun Wu, Jincai Zhang, Zhensheng Zhang, Jiachao Yu, Zhiwei Liu, Luzheng Liu, Xiangmei Li, Bidan Zheng, Jinfang |
author_facet | Xu, Dafeng Wang, Yu Zhou, Kailun Wu, Jincai Zhang, Zhensheng Zhang, Jiachao Yu, Zhiwei Liu, Luzheng Liu, Xiangmei Li, Bidan Zheng, Jinfang |
author_sort | Xu, Dafeng |
collection | PubMed |
description | BACKGROUND: The immune microenvironment plays a vital role in the development of hepatocellular carcinoma (HCC). This study explored novel immune-related biomarkers to predict the prognosis of patients with HCC. METHODS: RNA-Seq data were downloaded from The Cancer Genome Atlas (TCGA). Univariate Cox regression was used to identify prognosis-related genes; the Lasso method was used to construct the prognosis risk model. Validation was performed on the International Cancer Genome Consortium (ICGC) cohort, and the C-index was calculated to evaluate its overall predictive performance. Western blots were conducted to evaluate the expression of genes. RESULTS: There were 320 immune-related genes, 40 of which were significantly related to prognosis. Eight immune gene signatures (CKLF, IL12A, CCL20, PRELID1, GLMN, ACVR2A, CD7, and FYN) were established by Lasso Cox regression analysis. This immune signature performed well in different cohorts and can be an independent risk factor for prognosis. In addition, the overall predictive performance of this model was higher than the other models reported previously. CONCLUSION: The predictive immune model will enable patients with HCC to be more accurately managed in immunotherapy. |
format | Online Article Text |
id | pubmed-7439501 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Dove |
record_format | MEDLINE/PubMed |
spelling | pubmed-74395012020-09-02 Development and Validation of a Novel 8 Immune Gene Prognostic Signature Based on the Immune Expression Profile for Hepatocellular Carcinoma Xu, Dafeng Wang, Yu Zhou, Kailun Wu, Jincai Zhang, Zhensheng Zhang, Jiachao Yu, Zhiwei Liu, Luzheng Liu, Xiangmei Li, Bidan Zheng, Jinfang Onco Targets Ther Original Research BACKGROUND: The immune microenvironment plays a vital role in the development of hepatocellular carcinoma (HCC). This study explored novel immune-related biomarkers to predict the prognosis of patients with HCC. METHODS: RNA-Seq data were downloaded from The Cancer Genome Atlas (TCGA). Univariate Cox regression was used to identify prognosis-related genes; the Lasso method was used to construct the prognosis risk model. Validation was performed on the International Cancer Genome Consortium (ICGC) cohort, and the C-index was calculated to evaluate its overall predictive performance. Western blots were conducted to evaluate the expression of genes. RESULTS: There were 320 immune-related genes, 40 of which were significantly related to prognosis. Eight immune gene signatures (CKLF, IL12A, CCL20, PRELID1, GLMN, ACVR2A, CD7, and FYN) were established by Lasso Cox regression analysis. This immune signature performed well in different cohorts and can be an independent risk factor for prognosis. In addition, the overall predictive performance of this model was higher than the other models reported previously. CONCLUSION: The predictive immune model will enable patients with HCC to be more accurately managed in immunotherapy. Dove 2020-08-14 /pmc/articles/PMC7439501/ /pubmed/32884295 http://dx.doi.org/10.2147/OTT.S263047 Text en © 2020 Xu et al. http://creativecommons.org/licenses/by-nc/3.0/ This work is published and licensed by Dove Medical Press Limited. The full terms of this license are available at https://www.dovepress.com/terms.php and incorporate the Creative Commons Attribution – Non Commercial (unported, v3.0) License (http://creativecommons.org/licenses/by-nc/3.0/). By accessing the work you hereby accept the Terms. Non-commercial uses of the work are permitted without any further permission from Dove Medical Press Limited, provided the work is properly attributed. For permission for commercial use of this work, please see paragraphs 4.2 and 5 of our Terms (https://www.dovepress.com/terms.php). |
spellingShingle | Original Research Xu, Dafeng Wang, Yu Zhou, Kailun Wu, Jincai Zhang, Zhensheng Zhang, Jiachao Yu, Zhiwei Liu, Luzheng Liu, Xiangmei Li, Bidan Zheng, Jinfang Development and Validation of a Novel 8 Immune Gene Prognostic Signature Based on the Immune Expression Profile for Hepatocellular Carcinoma |
title | Development and Validation of a Novel 8 Immune Gene Prognostic Signature Based on the Immune Expression Profile for Hepatocellular Carcinoma |
title_full | Development and Validation of a Novel 8 Immune Gene Prognostic Signature Based on the Immune Expression Profile for Hepatocellular Carcinoma |
title_fullStr | Development and Validation of a Novel 8 Immune Gene Prognostic Signature Based on the Immune Expression Profile for Hepatocellular Carcinoma |
title_full_unstemmed | Development and Validation of a Novel 8 Immune Gene Prognostic Signature Based on the Immune Expression Profile for Hepatocellular Carcinoma |
title_short | Development and Validation of a Novel 8 Immune Gene Prognostic Signature Based on the Immune Expression Profile for Hepatocellular Carcinoma |
title_sort | development and validation of a novel 8 immune gene prognostic signature based on the immune expression profile for hepatocellular carcinoma |
topic | Original Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7439501/ https://www.ncbi.nlm.nih.gov/pubmed/32884295 http://dx.doi.org/10.2147/OTT.S263047 |
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