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Advanced Analysis of Biosensor Data for SARS-CoV-2 RBD and ACE2 Interactions

[Image: see text] The traditional approach for analyzing interaction data from biosensors instruments is based on the simplified assumption that also larger biomolecules interactions are homogeneous. It was recently reported that the human receptor angiotensin-converting enzyme 2 (ACE2) plays a key...

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Autores principales: Forssén, Patrik, Samuelsson, Jörgen, Lacki, Karol, Fornstedt, Torgny
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2020
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7440141/
https://www.ncbi.nlm.nih.gov/pubmed/32786452
http://dx.doi.org/10.1021/acs.analchem.0c02475
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author Forssén, Patrik
Samuelsson, Jörgen
Lacki, Karol
Fornstedt, Torgny
author_facet Forssén, Patrik
Samuelsson, Jörgen
Lacki, Karol
Fornstedt, Torgny
author_sort Forssén, Patrik
collection PubMed
description [Image: see text] The traditional approach for analyzing interaction data from biosensors instruments is based on the simplified assumption that also larger biomolecules interactions are homogeneous. It was recently reported that the human receptor angiotensin-converting enzyme 2 (ACE2) plays a key role for capturing SARS-CoV-2 into the human target body, and binding studies were performed using biosensors techniques based on surface plasmon resonance and bio-layer interferometry. The published affinity constants for the interactions, derived using the traditional approach, described a single interaction between ACE2 and the SARS-CoV-2 receptor binding domain (RBD). We reanalyzed these data sets using our advanced four-step approach based on an adaptive interaction distribution algorithm (AIDA) that accounts for the great complexity of larger biomolecules and gives a two-dimensional distribution of association and dissociation rate constants. Our results showed that in both cases the standard assumption about a single interaction was erroneous, and in one of the cases, the value of the affinity constant K(D) differed more than 300% between the reported value and our calculation. This information can prove very useful in providing mechanistic information and insights about the mechanism of interactions between ACE2 and SARS-CoV-2 RBD or similar systems.
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spelling pubmed-74401412020-08-20 Advanced Analysis of Biosensor Data for SARS-CoV-2 RBD and ACE2 Interactions Forssén, Patrik Samuelsson, Jörgen Lacki, Karol Fornstedt, Torgny Anal Chem [Image: see text] The traditional approach for analyzing interaction data from biosensors instruments is based on the simplified assumption that also larger biomolecules interactions are homogeneous. It was recently reported that the human receptor angiotensin-converting enzyme 2 (ACE2) plays a key role for capturing SARS-CoV-2 into the human target body, and binding studies were performed using biosensors techniques based on surface plasmon resonance and bio-layer interferometry. The published affinity constants for the interactions, derived using the traditional approach, described a single interaction between ACE2 and the SARS-CoV-2 receptor binding domain (RBD). We reanalyzed these data sets using our advanced four-step approach based on an adaptive interaction distribution algorithm (AIDA) that accounts for the great complexity of larger biomolecules and gives a two-dimensional distribution of association and dissociation rate constants. Our results showed that in both cases the standard assumption about a single interaction was erroneous, and in one of the cases, the value of the affinity constant K(D) differed more than 300% between the reported value and our calculation. This information can prove very useful in providing mechanistic information and insights about the mechanism of interactions between ACE2 and SARS-CoV-2 RBD or similar systems. American Chemical Society 2020-08-10 2020-09-01 /pmc/articles/PMC7440141/ /pubmed/32786452 http://dx.doi.org/10.1021/acs.analchem.0c02475 Text en Copyright © 2020 American Chemical Society This is an open access article published under a Creative Commons Attribution (CC-BY) License (http://pubs.acs.org/page/policy/authorchoice_ccby_termsofuse.html) , which permits unrestricted use, distribution and reproduction in any medium, provided the author and source are cited.
spellingShingle Forssén, Patrik
Samuelsson, Jörgen
Lacki, Karol
Fornstedt, Torgny
Advanced Analysis of Biosensor Data for SARS-CoV-2 RBD and ACE2 Interactions
title Advanced Analysis of Biosensor Data for SARS-CoV-2 RBD and ACE2 Interactions
title_full Advanced Analysis of Biosensor Data for SARS-CoV-2 RBD and ACE2 Interactions
title_fullStr Advanced Analysis of Biosensor Data for SARS-CoV-2 RBD and ACE2 Interactions
title_full_unstemmed Advanced Analysis of Biosensor Data for SARS-CoV-2 RBD and ACE2 Interactions
title_short Advanced Analysis of Biosensor Data for SARS-CoV-2 RBD and ACE2 Interactions
title_sort advanced analysis of biosensor data for sars-cov-2 rbd and ace2 interactions
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7440141/
https://www.ncbi.nlm.nih.gov/pubmed/32786452
http://dx.doi.org/10.1021/acs.analchem.0c02475
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