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Transcriptome analysis provides a blueprint of coral egg and sperm functions
BACKGROUND: Reproductive biology and the evolutionary constraints acting on dispersal stages are poorly understood in many stony coral species. A key piece of missing information is egg and sperm gene expression. This is critical for broadcast spawning corals, such as our model, the Hawaiian species...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
PeerJ Inc.
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7441918/ https://www.ncbi.nlm.nih.gov/pubmed/32874783 http://dx.doi.org/10.7717/peerj.9739 |
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author | Van Etten, Julia Shumaker, Alexander Mass, Tali Putnam, Hollie M. Bhattacharya, Debashish |
author_facet | Van Etten, Julia Shumaker, Alexander Mass, Tali Putnam, Hollie M. Bhattacharya, Debashish |
author_sort | Van Etten, Julia |
collection | PubMed |
description | BACKGROUND: Reproductive biology and the evolutionary constraints acting on dispersal stages are poorly understood in many stony coral species. A key piece of missing information is egg and sperm gene expression. This is critical for broadcast spawning corals, such as our model, the Hawaiian species Montipora capitata, because eggs and sperm are exposed to environmental stressors during dispersal. Furthermore, parental effects such as transcriptome investment may provide a means for cross- or trans-generational plasticity and be apparent in egg and sperm transcriptome data. METHODS: Here, we analyzed M. capitata egg and sperm transcriptomic data to address three questions: (1) Which pathways and functions are actively transcribed in these gametes? (2) How does sperm and egg gene expression differ from adult tissues? (3) Does gene expression differ between these gametes? RESULTS: We show that egg and sperm display surprisingly similar levels of gene expression and overlapping functional enrichment patterns. These results may reflect similar environmental constraints faced by these motile gametes. We find significant differences in differential expression of egg vs. adult and sperm vs. adult RNA-seq data, in contrast to very few examples of differential expression when comparing egg vs. sperm transcriptomes. Lastly, using gene ontology and KEGG orthology data we show that both egg and sperm have markedly repressed transcription and translation machinery compared to the adult, suggesting a dependence on parental transcripts. We speculate that cell motility and calcium ion binding genes may be involved in gamete to gamete recognition in the water column and thus, fertilization. |
format | Online Article Text |
id | pubmed-7441918 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | PeerJ Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-74419182020-08-31 Transcriptome analysis provides a blueprint of coral egg and sperm functions Van Etten, Julia Shumaker, Alexander Mass, Tali Putnam, Hollie M. Bhattacharya, Debashish PeerJ Evolutionary Studies BACKGROUND: Reproductive biology and the evolutionary constraints acting on dispersal stages are poorly understood in many stony coral species. A key piece of missing information is egg and sperm gene expression. This is critical for broadcast spawning corals, such as our model, the Hawaiian species Montipora capitata, because eggs and sperm are exposed to environmental stressors during dispersal. Furthermore, parental effects such as transcriptome investment may provide a means for cross- or trans-generational plasticity and be apparent in egg and sperm transcriptome data. METHODS: Here, we analyzed M. capitata egg and sperm transcriptomic data to address three questions: (1) Which pathways and functions are actively transcribed in these gametes? (2) How does sperm and egg gene expression differ from adult tissues? (3) Does gene expression differ between these gametes? RESULTS: We show that egg and sperm display surprisingly similar levels of gene expression and overlapping functional enrichment patterns. These results may reflect similar environmental constraints faced by these motile gametes. We find significant differences in differential expression of egg vs. adult and sperm vs. adult RNA-seq data, in contrast to very few examples of differential expression when comparing egg vs. sperm transcriptomes. Lastly, using gene ontology and KEGG orthology data we show that both egg and sperm have markedly repressed transcription and translation machinery compared to the adult, suggesting a dependence on parental transcripts. We speculate that cell motility and calcium ion binding genes may be involved in gamete to gamete recognition in the water column and thus, fertilization. PeerJ Inc. 2020-08-18 /pmc/articles/PMC7441918/ /pubmed/32874783 http://dx.doi.org/10.7717/peerj.9739 Text en ©2020 Van Etten et al. https://creativecommons.org/licenses/by-nc/4.0 This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by-nc/4.0) , which permits using, remixing, and building upon the work non-commercially, as long as it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited. |
spellingShingle | Evolutionary Studies Van Etten, Julia Shumaker, Alexander Mass, Tali Putnam, Hollie M. Bhattacharya, Debashish Transcriptome analysis provides a blueprint of coral egg and sperm functions |
title | Transcriptome analysis provides a blueprint of coral egg and sperm functions |
title_full | Transcriptome analysis provides a blueprint of coral egg and sperm functions |
title_fullStr | Transcriptome analysis provides a blueprint of coral egg and sperm functions |
title_full_unstemmed | Transcriptome analysis provides a blueprint of coral egg and sperm functions |
title_short | Transcriptome analysis provides a blueprint of coral egg and sperm functions |
title_sort | transcriptome analysis provides a blueprint of coral egg and sperm functions |
topic | Evolutionary Studies |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7441918/ https://www.ncbi.nlm.nih.gov/pubmed/32874783 http://dx.doi.org/10.7717/peerj.9739 |
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