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A universal tradeoff between growth and lag in fluctuating environments

The rate of cell growth is crucial for bacterial fitness and a main driver of proteome allocation(1,2), but it is unclear what ultimately determines growth rates in different environmental conditions. Increasing evidence suggests that other objectives also play key roles(3–7), such as the rate of ph...

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Autores principales: Basan, Markus, Honda, Tomoya, Christodoulou, Dimitris, Hörl, Manuel, Chang, Yu-Fang, Leoncini, Emanuele, Mukherjee, Avik, Okano, Hiroyuki, Taylor, Brian R., Silverman, Josh M., Sanchez, Carlos, Williamson, James R., Paulsson, Johan, Hwa, Terence, Sauer, Uwe
Formato: Online Artículo Texto
Lenguaje:English
Publicado: 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7442741/
https://www.ncbi.nlm.nih.gov/pubmed/32669712
http://dx.doi.org/10.1038/s41586-020-2505-4
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author Basan, Markus
Honda, Tomoya
Christodoulou, Dimitris
Hörl, Manuel
Chang, Yu-Fang
Leoncini, Emanuele
Mukherjee, Avik
Okano, Hiroyuki
Taylor, Brian R.
Silverman, Josh M.
Sanchez, Carlos
Williamson, James R.
Paulsson, Johan
Hwa, Terence
Sauer, Uwe
author_facet Basan, Markus
Honda, Tomoya
Christodoulou, Dimitris
Hörl, Manuel
Chang, Yu-Fang
Leoncini, Emanuele
Mukherjee, Avik
Okano, Hiroyuki
Taylor, Brian R.
Silverman, Josh M.
Sanchez, Carlos
Williamson, James R.
Paulsson, Johan
Hwa, Terence
Sauer, Uwe
author_sort Basan, Markus
collection PubMed
description The rate of cell growth is crucial for bacterial fitness and a main driver of proteome allocation(1,2), but it is unclear what ultimately determines growth rates in different environmental conditions. Increasing evidence suggests that other objectives also play key roles(3–7), such as the rate of physiological adaptation to changing environments(8,9). The challenge for cells is that these objectives often cannot be independently optimized, and maximizing one often reduces another. Many such tradeoffs have indeed been hypothesized, based on qualitative correlative studies(8–11). Here we report the occurrence of a tradeoff between steady-state growth rate and physiological adaptability for Escherichia coli, upon abruptly shifting a growing culture from a preferred carbon source to fermentation products such as acetate. Such transitions, common for enteric bacteria, are often accompanied by multi-hour lags before growth resumes. Metabolomic analysis revealed that the long lags resulted from the depletion of key metabolites due to the sudden reversal of central carbon flux imposed by these nutrient shifts. A model of sequential flux limitation not only explained the observed universal tradeoff between growth and adaptability, but also generated quantitative predictions that were validated experimentally. The observed trade-off reflects the opposing enzyme requirements for glycolysis versus gluconeogenesis.
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spelling pubmed-74427412021-01-15 A universal tradeoff between growth and lag in fluctuating environments Basan, Markus Honda, Tomoya Christodoulou, Dimitris Hörl, Manuel Chang, Yu-Fang Leoncini, Emanuele Mukherjee, Avik Okano, Hiroyuki Taylor, Brian R. Silverman, Josh M. Sanchez, Carlos Williamson, James R. Paulsson, Johan Hwa, Terence Sauer, Uwe Nature Article The rate of cell growth is crucial for bacterial fitness and a main driver of proteome allocation(1,2), but it is unclear what ultimately determines growth rates in different environmental conditions. Increasing evidence suggests that other objectives also play key roles(3–7), such as the rate of physiological adaptation to changing environments(8,9). The challenge for cells is that these objectives often cannot be independently optimized, and maximizing one often reduces another. Many such tradeoffs have indeed been hypothesized, based on qualitative correlative studies(8–11). Here we report the occurrence of a tradeoff between steady-state growth rate and physiological adaptability for Escherichia coli, upon abruptly shifting a growing culture from a preferred carbon source to fermentation products such as acetate. Such transitions, common for enteric bacteria, are often accompanied by multi-hour lags before growth resumes. Metabolomic analysis revealed that the long lags resulted from the depletion of key metabolites due to the sudden reversal of central carbon flux imposed by these nutrient shifts. A model of sequential flux limitation not only explained the observed universal tradeoff between growth and adaptability, but also generated quantitative predictions that were validated experimentally. The observed trade-off reflects the opposing enzyme requirements for glycolysis versus gluconeogenesis. 2020-07-15 2020-08 /pmc/articles/PMC7442741/ /pubmed/32669712 http://dx.doi.org/10.1038/s41586-020-2505-4 Text en Users may view, print, copy, and download text and data-mine the content in such documents, for the purposes of academic research, subject always to the full Conditions of use:http://www.nature.com/authors/editorial_policies/license.html#terms
spellingShingle Article
Basan, Markus
Honda, Tomoya
Christodoulou, Dimitris
Hörl, Manuel
Chang, Yu-Fang
Leoncini, Emanuele
Mukherjee, Avik
Okano, Hiroyuki
Taylor, Brian R.
Silverman, Josh M.
Sanchez, Carlos
Williamson, James R.
Paulsson, Johan
Hwa, Terence
Sauer, Uwe
A universal tradeoff between growth and lag in fluctuating environments
title A universal tradeoff between growth and lag in fluctuating environments
title_full A universal tradeoff between growth and lag in fluctuating environments
title_fullStr A universal tradeoff between growth and lag in fluctuating environments
title_full_unstemmed A universal tradeoff between growth and lag in fluctuating environments
title_short A universal tradeoff between growth and lag in fluctuating environments
title_sort universal tradeoff between growth and lag in fluctuating environments
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7442741/
https://www.ncbi.nlm.nih.gov/pubmed/32669712
http://dx.doi.org/10.1038/s41586-020-2505-4
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