Cargando…

Development of a Machine Learning Model for Survival Risk Stratification of Patients With Advanced Oral Cancer

IMPORTANCE: A tool for precisely stratifying postoperative patients with advanced oral cancer is crucial for the treatment plan, such as intensifying or deintensifying the regimen to improve their quality of life and prognosis. OBJECTIVE: To develop and validate a machine learning–based algorithm th...

Descripción completa

Detalles Bibliográficos
Autores principales: Tseng, Yi-Ju, Wang, Hsin-Yao, Lin, Ting-Wei, Lu, Jang-Jih, Hsieh, Chia-Hsun, Liao, Chun-Ta
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Medical Association 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7442932/
https://www.ncbi.nlm.nih.gov/pubmed/32821921
http://dx.doi.org/10.1001/jamanetworkopen.2020.11768
_version_ 1783573534559174656
author Tseng, Yi-Ju
Wang, Hsin-Yao
Lin, Ting-Wei
Lu, Jang-Jih
Hsieh, Chia-Hsun
Liao, Chun-Ta
author_facet Tseng, Yi-Ju
Wang, Hsin-Yao
Lin, Ting-Wei
Lu, Jang-Jih
Hsieh, Chia-Hsun
Liao, Chun-Ta
author_sort Tseng, Yi-Ju
collection PubMed
description IMPORTANCE: A tool for precisely stratifying postoperative patients with advanced oral cancer is crucial for the treatment plan, such as intensifying or deintensifying the regimen to improve their quality of life and prognosis. OBJECTIVE: To develop and validate a machine learning–based algorithm that can provide survival risk stratification for patients with advanced oral cancer who have comprehensive clinicopathologic and genetic data. DESIGN, SETTING, AND PARTICIPANTS: In this prognostic cohort study, the elastic net penalized Cox proportional hazards regression–based risk stratification model was developed and validated using single-center data collected between January 1, 1996, and December 31, 2011. In total, comprehensive clinicopathologic and genetic data (including clinical, pathologic, and 44 cancer-related gene variant profiles) of 334 patients with stage III or IV oral squamous cell carcinoma were used to develop and validate the algorithm in this 15-year cohort study. Data analysis was conducted between February 1, 2018, and May 6, 2020. MAIN OUTCOMES AND MEASURES: The main outcomes were cancer-specific survival, distant metastasis–free survival, and locoregional recurrence–free survival. Model performance was compared in terms of the Akaike information criterion and the Harrell concordance index (C index). RESULTS: Complete data were available for 334 patients (315 men; median age at onset, 48 years [interquartile range, 42-56 years]). The predictive models using comprehensive clinicopathologic and genetic data outperformed those using clinicopathologic data alone. In the groups of postoperative patients receiving adjuvant concurrent chemoradiotherapy, the models demonstrated higher classification performance than those using clinicopathologic data alone in cancer-specific survival (mean [SD] C index, 0.689 [0.050] vs 0.673 [0.051]; P = .02) and locoregional recurrence–free survival (mean [SD] C index, 0.693 [0.039] vs 0.678 [0.035]; P = .004). The classification performance in distant metastasis–free survival was not different (mean [SD] C index, 0.702 [0.056] vs 0.688 [0.048]; P = .09). CONCLUSIONS AND RELEVANCE: A risk stratification model using comprehensive clinicopathologic and genetic data accurately differentiated the high-risk group from the low-risk group in cancer-specific survival and locoregional recurrence–free survival for postoperative patients with advanced oral cancer. This algorithm could be used through an online calculator to provide additional personalized information for postoperative management of patients with advanced oral squamous cell carcinoma.
format Online
Article
Text
id pubmed-7442932
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher American Medical Association
record_format MEDLINE/PubMed
spelling pubmed-74429322020-08-24 Development of a Machine Learning Model for Survival Risk Stratification of Patients With Advanced Oral Cancer Tseng, Yi-Ju Wang, Hsin-Yao Lin, Ting-Wei Lu, Jang-Jih Hsieh, Chia-Hsun Liao, Chun-Ta JAMA Netw Open Original Investigation IMPORTANCE: A tool for precisely stratifying postoperative patients with advanced oral cancer is crucial for the treatment plan, such as intensifying or deintensifying the regimen to improve their quality of life and prognosis. OBJECTIVE: To develop and validate a machine learning–based algorithm that can provide survival risk stratification for patients with advanced oral cancer who have comprehensive clinicopathologic and genetic data. DESIGN, SETTING, AND PARTICIPANTS: In this prognostic cohort study, the elastic net penalized Cox proportional hazards regression–based risk stratification model was developed and validated using single-center data collected between January 1, 1996, and December 31, 2011. In total, comprehensive clinicopathologic and genetic data (including clinical, pathologic, and 44 cancer-related gene variant profiles) of 334 patients with stage III or IV oral squamous cell carcinoma were used to develop and validate the algorithm in this 15-year cohort study. Data analysis was conducted between February 1, 2018, and May 6, 2020. MAIN OUTCOMES AND MEASURES: The main outcomes were cancer-specific survival, distant metastasis–free survival, and locoregional recurrence–free survival. Model performance was compared in terms of the Akaike information criterion and the Harrell concordance index (C index). RESULTS: Complete data were available for 334 patients (315 men; median age at onset, 48 years [interquartile range, 42-56 years]). The predictive models using comprehensive clinicopathologic and genetic data outperformed those using clinicopathologic data alone. In the groups of postoperative patients receiving adjuvant concurrent chemoradiotherapy, the models demonstrated higher classification performance than those using clinicopathologic data alone in cancer-specific survival (mean [SD] C index, 0.689 [0.050] vs 0.673 [0.051]; P = .02) and locoregional recurrence–free survival (mean [SD] C index, 0.693 [0.039] vs 0.678 [0.035]; P = .004). The classification performance in distant metastasis–free survival was not different (mean [SD] C index, 0.702 [0.056] vs 0.688 [0.048]; P = .09). CONCLUSIONS AND RELEVANCE: A risk stratification model using comprehensive clinicopathologic and genetic data accurately differentiated the high-risk group from the low-risk group in cancer-specific survival and locoregional recurrence–free survival for postoperative patients with advanced oral cancer. This algorithm could be used through an online calculator to provide additional personalized information for postoperative management of patients with advanced oral squamous cell carcinoma. American Medical Association 2020-08-21 /pmc/articles/PMC7442932/ /pubmed/32821921 http://dx.doi.org/10.1001/jamanetworkopen.2020.11768 Text en Copyright 2020 Tseng Y-J et al. JAMA Network Open. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the CC-BY License.
spellingShingle Original Investigation
Tseng, Yi-Ju
Wang, Hsin-Yao
Lin, Ting-Wei
Lu, Jang-Jih
Hsieh, Chia-Hsun
Liao, Chun-Ta
Development of a Machine Learning Model for Survival Risk Stratification of Patients With Advanced Oral Cancer
title Development of a Machine Learning Model for Survival Risk Stratification of Patients With Advanced Oral Cancer
title_full Development of a Machine Learning Model for Survival Risk Stratification of Patients With Advanced Oral Cancer
title_fullStr Development of a Machine Learning Model for Survival Risk Stratification of Patients With Advanced Oral Cancer
title_full_unstemmed Development of a Machine Learning Model for Survival Risk Stratification of Patients With Advanced Oral Cancer
title_short Development of a Machine Learning Model for Survival Risk Stratification of Patients With Advanced Oral Cancer
title_sort development of a machine learning model for survival risk stratification of patients with advanced oral cancer
topic Original Investigation
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7442932/
https://www.ncbi.nlm.nih.gov/pubmed/32821921
http://dx.doi.org/10.1001/jamanetworkopen.2020.11768
work_keys_str_mv AT tsengyiju developmentofamachinelearningmodelforsurvivalriskstratificationofpatientswithadvancedoralcancer
AT wanghsinyao developmentofamachinelearningmodelforsurvivalriskstratificationofpatientswithadvancedoralcancer
AT lintingwei developmentofamachinelearningmodelforsurvivalriskstratificationofpatientswithadvancedoralcancer
AT lujangjih developmentofamachinelearningmodelforsurvivalriskstratificationofpatientswithadvancedoralcancer
AT hsiehchiahsun developmentofamachinelearningmodelforsurvivalriskstratificationofpatientswithadvancedoralcancer
AT liaochunta developmentofamachinelearningmodelforsurvivalriskstratificationofpatientswithadvancedoralcancer