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Development of a Machine Learning Model for Survival Risk Stratification of Patients With Advanced Oral Cancer
IMPORTANCE: A tool for precisely stratifying postoperative patients with advanced oral cancer is crucial for the treatment plan, such as intensifying or deintensifying the regimen to improve their quality of life and prognosis. OBJECTIVE: To develop and validate a machine learning–based algorithm th...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Medical Association
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7442932/ https://www.ncbi.nlm.nih.gov/pubmed/32821921 http://dx.doi.org/10.1001/jamanetworkopen.2020.11768 |
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author | Tseng, Yi-Ju Wang, Hsin-Yao Lin, Ting-Wei Lu, Jang-Jih Hsieh, Chia-Hsun Liao, Chun-Ta |
author_facet | Tseng, Yi-Ju Wang, Hsin-Yao Lin, Ting-Wei Lu, Jang-Jih Hsieh, Chia-Hsun Liao, Chun-Ta |
author_sort | Tseng, Yi-Ju |
collection | PubMed |
description | IMPORTANCE: A tool for precisely stratifying postoperative patients with advanced oral cancer is crucial for the treatment plan, such as intensifying or deintensifying the regimen to improve their quality of life and prognosis. OBJECTIVE: To develop and validate a machine learning–based algorithm that can provide survival risk stratification for patients with advanced oral cancer who have comprehensive clinicopathologic and genetic data. DESIGN, SETTING, AND PARTICIPANTS: In this prognostic cohort study, the elastic net penalized Cox proportional hazards regression–based risk stratification model was developed and validated using single-center data collected between January 1, 1996, and December 31, 2011. In total, comprehensive clinicopathologic and genetic data (including clinical, pathologic, and 44 cancer-related gene variant profiles) of 334 patients with stage III or IV oral squamous cell carcinoma were used to develop and validate the algorithm in this 15-year cohort study. Data analysis was conducted between February 1, 2018, and May 6, 2020. MAIN OUTCOMES AND MEASURES: The main outcomes were cancer-specific survival, distant metastasis–free survival, and locoregional recurrence–free survival. Model performance was compared in terms of the Akaike information criterion and the Harrell concordance index (C index). RESULTS: Complete data were available for 334 patients (315 men; median age at onset, 48 years [interquartile range, 42-56 years]). The predictive models using comprehensive clinicopathologic and genetic data outperformed those using clinicopathologic data alone. In the groups of postoperative patients receiving adjuvant concurrent chemoradiotherapy, the models demonstrated higher classification performance than those using clinicopathologic data alone in cancer-specific survival (mean [SD] C index, 0.689 [0.050] vs 0.673 [0.051]; P = .02) and locoregional recurrence–free survival (mean [SD] C index, 0.693 [0.039] vs 0.678 [0.035]; P = .004). The classification performance in distant metastasis–free survival was not different (mean [SD] C index, 0.702 [0.056] vs 0.688 [0.048]; P = .09). CONCLUSIONS AND RELEVANCE: A risk stratification model using comprehensive clinicopathologic and genetic data accurately differentiated the high-risk group from the low-risk group in cancer-specific survival and locoregional recurrence–free survival for postoperative patients with advanced oral cancer. This algorithm could be used through an online calculator to provide additional personalized information for postoperative management of patients with advanced oral squamous cell carcinoma. |
format | Online Article Text |
id | pubmed-7442932 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | American Medical Association |
record_format | MEDLINE/PubMed |
spelling | pubmed-74429322020-08-24 Development of a Machine Learning Model for Survival Risk Stratification of Patients With Advanced Oral Cancer Tseng, Yi-Ju Wang, Hsin-Yao Lin, Ting-Wei Lu, Jang-Jih Hsieh, Chia-Hsun Liao, Chun-Ta JAMA Netw Open Original Investigation IMPORTANCE: A tool for precisely stratifying postoperative patients with advanced oral cancer is crucial for the treatment plan, such as intensifying or deintensifying the regimen to improve their quality of life and prognosis. OBJECTIVE: To develop and validate a machine learning–based algorithm that can provide survival risk stratification for patients with advanced oral cancer who have comprehensive clinicopathologic and genetic data. DESIGN, SETTING, AND PARTICIPANTS: In this prognostic cohort study, the elastic net penalized Cox proportional hazards regression–based risk stratification model was developed and validated using single-center data collected between January 1, 1996, and December 31, 2011. In total, comprehensive clinicopathologic and genetic data (including clinical, pathologic, and 44 cancer-related gene variant profiles) of 334 patients with stage III or IV oral squamous cell carcinoma were used to develop and validate the algorithm in this 15-year cohort study. Data analysis was conducted between February 1, 2018, and May 6, 2020. MAIN OUTCOMES AND MEASURES: The main outcomes were cancer-specific survival, distant metastasis–free survival, and locoregional recurrence–free survival. Model performance was compared in terms of the Akaike information criterion and the Harrell concordance index (C index). RESULTS: Complete data were available for 334 patients (315 men; median age at onset, 48 years [interquartile range, 42-56 years]). The predictive models using comprehensive clinicopathologic and genetic data outperformed those using clinicopathologic data alone. In the groups of postoperative patients receiving adjuvant concurrent chemoradiotherapy, the models demonstrated higher classification performance than those using clinicopathologic data alone in cancer-specific survival (mean [SD] C index, 0.689 [0.050] vs 0.673 [0.051]; P = .02) and locoregional recurrence–free survival (mean [SD] C index, 0.693 [0.039] vs 0.678 [0.035]; P = .004). The classification performance in distant metastasis–free survival was not different (mean [SD] C index, 0.702 [0.056] vs 0.688 [0.048]; P = .09). CONCLUSIONS AND RELEVANCE: A risk stratification model using comprehensive clinicopathologic and genetic data accurately differentiated the high-risk group from the low-risk group in cancer-specific survival and locoregional recurrence–free survival for postoperative patients with advanced oral cancer. This algorithm could be used through an online calculator to provide additional personalized information for postoperative management of patients with advanced oral squamous cell carcinoma. American Medical Association 2020-08-21 /pmc/articles/PMC7442932/ /pubmed/32821921 http://dx.doi.org/10.1001/jamanetworkopen.2020.11768 Text en Copyright 2020 Tseng Y-J et al. JAMA Network Open. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the CC-BY License. |
spellingShingle | Original Investigation Tseng, Yi-Ju Wang, Hsin-Yao Lin, Ting-Wei Lu, Jang-Jih Hsieh, Chia-Hsun Liao, Chun-Ta Development of a Machine Learning Model for Survival Risk Stratification of Patients With Advanced Oral Cancer |
title | Development of a Machine Learning Model for Survival Risk Stratification of Patients With Advanced Oral Cancer |
title_full | Development of a Machine Learning Model for Survival Risk Stratification of Patients With Advanced Oral Cancer |
title_fullStr | Development of a Machine Learning Model for Survival Risk Stratification of Patients With Advanced Oral Cancer |
title_full_unstemmed | Development of a Machine Learning Model for Survival Risk Stratification of Patients With Advanced Oral Cancer |
title_short | Development of a Machine Learning Model for Survival Risk Stratification of Patients With Advanced Oral Cancer |
title_sort | development of a machine learning model for survival risk stratification of patients with advanced oral cancer |
topic | Original Investigation |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7442932/ https://www.ncbi.nlm.nih.gov/pubmed/32821921 http://dx.doi.org/10.1001/jamanetworkopen.2020.11768 |
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