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Applying machine learning in motor activity time series of depressed bipolar and unipolar patients compared to healthy controls
Current practice of assessing mood episodes in affective disorders largely depends on subjective observations combined with semi-structured clinical rating scales. Motor activity is an objective observation of the inner physiological state expressed in behavior patterns. Alterations of motor activit...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7446864/ https://www.ncbi.nlm.nih.gov/pubmed/32833958 http://dx.doi.org/10.1371/journal.pone.0231995 |
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author | Jakobsen, Petter Garcia-Ceja, Enrique Riegler, Michael Stabell, Lena Antonsen Nordgreen, Tine Torresen, Jim Fasmer, Ole Bernt Oedegaard, Ketil Joachim |
author_facet | Jakobsen, Petter Garcia-Ceja, Enrique Riegler, Michael Stabell, Lena Antonsen Nordgreen, Tine Torresen, Jim Fasmer, Ole Bernt Oedegaard, Ketil Joachim |
author_sort | Jakobsen, Petter |
collection | PubMed |
description | Current practice of assessing mood episodes in affective disorders largely depends on subjective observations combined with semi-structured clinical rating scales. Motor activity is an objective observation of the inner physiological state expressed in behavior patterns. Alterations of motor activity are essential features of bipolar and unipolar depression. The aim was to investigate if objective measures of motor activity can aid existing diagnostic practice, by applying machine-learning techniques to analyze activity patterns in depressed patients and healthy controls. Random Forrest, Deep Neural Network and Convolutional Neural Network algorithms were used to analyze 14 days of actigraph recorded motor activity from 23 depressed patients and 32 healthy controls. Statistical features analyzed in the dataset were mean activity, standard deviation of mean activity and proportion of zero activity. Various techniques to handle data imbalance were applied, and to ensure generalizability and avoid overfitting a Leave-One-User-Out validation strategy was utilized. All outcomes reports as measures of accuracy for binary tests. A Deep Neural Network combined with SMOTE class balancing technique performed a cut above the rest with a true positive rate of 0.82 (sensitivity) and a true negative rate of 0.84 (specificity). Accuracy was 0.84 and the Matthews Correlation Coefficient 0.65. Misclassifications appear related to data overlapping among the classes, so an appropriate future approach will be to compare mood states intra-individualistically. In summary, machine-learning techniques present promising abilities in discriminating between depressed patients and healthy controls in motor activity time series. |
format | Online Article Text |
id | pubmed-7446864 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-74468642020-08-26 Applying machine learning in motor activity time series of depressed bipolar and unipolar patients compared to healthy controls Jakobsen, Petter Garcia-Ceja, Enrique Riegler, Michael Stabell, Lena Antonsen Nordgreen, Tine Torresen, Jim Fasmer, Ole Bernt Oedegaard, Ketil Joachim PLoS One Research Article Current practice of assessing mood episodes in affective disorders largely depends on subjective observations combined with semi-structured clinical rating scales. Motor activity is an objective observation of the inner physiological state expressed in behavior patterns. Alterations of motor activity are essential features of bipolar and unipolar depression. The aim was to investigate if objective measures of motor activity can aid existing diagnostic practice, by applying machine-learning techniques to analyze activity patterns in depressed patients and healthy controls. Random Forrest, Deep Neural Network and Convolutional Neural Network algorithms were used to analyze 14 days of actigraph recorded motor activity from 23 depressed patients and 32 healthy controls. Statistical features analyzed in the dataset were mean activity, standard deviation of mean activity and proportion of zero activity. Various techniques to handle data imbalance were applied, and to ensure generalizability and avoid overfitting a Leave-One-User-Out validation strategy was utilized. All outcomes reports as measures of accuracy for binary tests. A Deep Neural Network combined with SMOTE class balancing technique performed a cut above the rest with a true positive rate of 0.82 (sensitivity) and a true negative rate of 0.84 (specificity). Accuracy was 0.84 and the Matthews Correlation Coefficient 0.65. Misclassifications appear related to data overlapping among the classes, so an appropriate future approach will be to compare mood states intra-individualistically. In summary, machine-learning techniques present promising abilities in discriminating between depressed patients and healthy controls in motor activity time series. Public Library of Science 2020-08-24 /pmc/articles/PMC7446864/ /pubmed/32833958 http://dx.doi.org/10.1371/journal.pone.0231995 Text en © 2020 Jakobsen et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Jakobsen, Petter Garcia-Ceja, Enrique Riegler, Michael Stabell, Lena Antonsen Nordgreen, Tine Torresen, Jim Fasmer, Ole Bernt Oedegaard, Ketil Joachim Applying machine learning in motor activity time series of depressed bipolar and unipolar patients compared to healthy controls |
title | Applying machine learning in motor activity time series of depressed bipolar and unipolar patients compared to healthy controls |
title_full | Applying machine learning in motor activity time series of depressed bipolar and unipolar patients compared to healthy controls |
title_fullStr | Applying machine learning in motor activity time series of depressed bipolar and unipolar patients compared to healthy controls |
title_full_unstemmed | Applying machine learning in motor activity time series of depressed bipolar and unipolar patients compared to healthy controls |
title_short | Applying machine learning in motor activity time series of depressed bipolar and unipolar patients compared to healthy controls |
title_sort | applying machine learning in motor activity time series of depressed bipolar and unipolar patients compared to healthy controls |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7446864/ https://www.ncbi.nlm.nih.gov/pubmed/32833958 http://dx.doi.org/10.1371/journal.pone.0231995 |
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