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Comparative analysis of morphological and molecular approaches integrated into the study of the dinoflagellate biodiversity within the recently deposited Black Sea sediments – benefits and drawbacks
One of the assets, assigned to the phytoplankton resting stages, is that of serving as the “memory” of the aquatic ecosystems and preserved biodiversity in the course of time. However, an accurate cyst identification proves to be a more difficult and extremely challenging process, even today. In ord...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Pensoft Publishers
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7447646/ https://www.ncbi.nlm.nih.gov/pubmed/32903988 http://dx.doi.org/10.3897/BDJ.8.e55172 |
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author | Dzhembekova, Nina Rubino, Fernando Nagai, Satoshi Zlateva, Ivelina Slabakova, Nataliya Ivanova, Petya Slabakova, Violeta Moncheva, Snejana |
author_facet | Dzhembekova, Nina Rubino, Fernando Nagai, Satoshi Zlateva, Ivelina Slabakova, Nataliya Ivanova, Petya Slabakova, Violeta Moncheva, Snejana |
author_sort | Dzhembekova, Nina |
collection | PubMed |
description | One of the assets, assigned to the phytoplankton resting stages, is that of serving as the “memory” of the aquatic ecosystems and preserved biodiversity in the course of time. However, an accurate cyst identification proves to be a more difficult and extremely challenging process, even today. In order to gain a better taxonomic coverage of cyst assemblages in the Black Sea, an integrated approach of the classical morphological identification with metabarcoding methods (MySeq sequencing of V7-V9 regions of the 18S rDNA) was applied on thirteen surface sediment samples collected from different sites. A total number of 112 dinoflagellate taxa was detected at the species level and ascribed to 51 genera. In general, it is the molecular analysis that yields a higher number of taxa as compared to those obtained through the morphological taxonomy (66 taxa based on the DNA sequences versus 56 morphologically-identified taxa). Besides, it should be pointed out that the integrated dataset includes 14 potentially toxic dinoflagellate species. Discerned, subsequently, was a good dataset consistency for ten species, followed by some discrepancies as to a number of taxa, identified with one of the methods only, due to specific methodological biases. On the whole, it could be concluded that the combination of morphological and molecular methods is likely to increase the potential for a more reliable taxonomic assessment of phytoplankton diversity in marine sediments which, in turn, proves conclusively the utmost importance of the integrated approach. |
format | Online Article Text |
id | pubmed-7447646 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Pensoft Publishers |
record_format | MEDLINE/PubMed |
spelling | pubmed-74476462020-09-03 Comparative analysis of morphological and molecular approaches integrated into the study of the dinoflagellate biodiversity within the recently deposited Black Sea sediments – benefits and drawbacks Dzhembekova, Nina Rubino, Fernando Nagai, Satoshi Zlateva, Ivelina Slabakova, Nataliya Ivanova, Petya Slabakova, Violeta Moncheva, Snejana Biodivers Data J Research Article One of the assets, assigned to the phytoplankton resting stages, is that of serving as the “memory” of the aquatic ecosystems and preserved biodiversity in the course of time. However, an accurate cyst identification proves to be a more difficult and extremely challenging process, even today. In order to gain a better taxonomic coverage of cyst assemblages in the Black Sea, an integrated approach of the classical morphological identification with metabarcoding methods (MySeq sequencing of V7-V9 regions of the 18S rDNA) was applied on thirteen surface sediment samples collected from different sites. A total number of 112 dinoflagellate taxa was detected at the species level and ascribed to 51 genera. In general, it is the molecular analysis that yields a higher number of taxa as compared to those obtained through the morphological taxonomy (66 taxa based on the DNA sequences versus 56 morphologically-identified taxa). Besides, it should be pointed out that the integrated dataset includes 14 potentially toxic dinoflagellate species. Discerned, subsequently, was a good dataset consistency for ten species, followed by some discrepancies as to a number of taxa, identified with one of the methods only, due to specific methodological biases. On the whole, it could be concluded that the combination of morphological and molecular methods is likely to increase the potential for a more reliable taxonomic assessment of phytoplankton diversity in marine sediments which, in turn, proves conclusively the utmost importance of the integrated approach. Pensoft Publishers 2020-08-18 /pmc/articles/PMC7447646/ /pubmed/32903988 http://dx.doi.org/10.3897/BDJ.8.e55172 Text en Nina Dzhembekova, Fernando Rubino, Satoshi Nagai, Ivelina Zlateva, Nataliya Slabakova, Petya Ivanova, Violeta Slabakova, Snejana Moncheva http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Dzhembekova, Nina Rubino, Fernando Nagai, Satoshi Zlateva, Ivelina Slabakova, Nataliya Ivanova, Petya Slabakova, Violeta Moncheva, Snejana Comparative analysis of morphological and molecular approaches integrated into the study of the dinoflagellate biodiversity within the recently deposited Black Sea sediments – benefits and drawbacks |
title | Comparative analysis of morphological and molecular approaches integrated into the study of the dinoflagellate biodiversity within the recently deposited Black Sea sediments – benefits and drawbacks |
title_full | Comparative analysis of morphological and molecular approaches integrated into the study of the dinoflagellate biodiversity within the recently deposited Black Sea sediments – benefits and drawbacks |
title_fullStr | Comparative analysis of morphological and molecular approaches integrated into the study of the dinoflagellate biodiversity within the recently deposited Black Sea sediments – benefits and drawbacks |
title_full_unstemmed | Comparative analysis of morphological and molecular approaches integrated into the study of the dinoflagellate biodiversity within the recently deposited Black Sea sediments – benefits and drawbacks |
title_short | Comparative analysis of morphological and molecular approaches integrated into the study of the dinoflagellate biodiversity within the recently deposited Black Sea sediments – benefits and drawbacks |
title_sort | comparative analysis of morphological and molecular approaches integrated into the study of the dinoflagellate biodiversity within the recently deposited black sea sediments – benefits and drawbacks |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7447646/ https://www.ncbi.nlm.nih.gov/pubmed/32903988 http://dx.doi.org/10.3897/BDJ.8.e55172 |
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