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MRI-based radiomics in breast cancer: feature robustness with respect to inter-observer segmentation variability
Radiomics is an emerging field using the extraction of quantitative features from medical images for tissue characterization. While MRI-based radiomics is still at an early stage, it showed some promising results in studies focusing on breast cancer patients in improving diagnoses and therapy respon...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7447771/ https://www.ncbi.nlm.nih.gov/pubmed/32843663 http://dx.doi.org/10.1038/s41598-020-70940-z |
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author | Granzier, R. W. Y. Verbakel, N. M. H. Ibrahim, A. van Timmeren, J. E. van Nijnatten, T. J. A. Leijenaar, R. T. H. Lobbes, M. B. I. Smidt, M. L. Woodruff, H. C. |
author_facet | Granzier, R. W. Y. Verbakel, N. M. H. Ibrahim, A. van Timmeren, J. E. van Nijnatten, T. J. A. Leijenaar, R. T. H. Lobbes, M. B. I. Smidt, M. L. Woodruff, H. C. |
author_sort | Granzier, R. W. Y. |
collection | PubMed |
description | Radiomics is an emerging field using the extraction of quantitative features from medical images for tissue characterization. While MRI-based radiomics is still at an early stage, it showed some promising results in studies focusing on breast cancer patients in improving diagnoses and therapy response assessment. Nevertheless, the use of radiomics raises a number of issues regarding feature quantification and robustness. Therefore, our study aim was to determine the robustness of radiomics features extracted by two commonly used radiomics software with respect to variability in manual breast tumor segmentation on MRI. A total of 129 histologically confirmed breast tumors were segmented manually in three dimensions on the first post-contrast T1-weighted MR exam by four observers: a dedicated breast radiologist, a resident, a Ph.D. candidate, and a medical student. Robust features were assessed using the intraclass correlation coefficient (ICC > 0.9). The inter-observer variability was evaluated by the volumetric Dice Similarity Coefficient (DSC). The mean DSC for all tumors was 0.81 (range 0.19–0.96), indicating a good spatial overlap of the segmentations based on observers of varying expertise. In total, 41.6% (552/1328) and 32.8% (273/833) of all RadiomiX and Pyradiomics features, respectively, were identified as robust and were independent of inter-observer manual segmentation variability. |
format | Online Article Text |
id | pubmed-7447771 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-74477712020-08-26 MRI-based radiomics in breast cancer: feature robustness with respect to inter-observer segmentation variability Granzier, R. W. Y. Verbakel, N. M. H. Ibrahim, A. van Timmeren, J. E. van Nijnatten, T. J. A. Leijenaar, R. T. H. Lobbes, M. B. I. Smidt, M. L. Woodruff, H. C. Sci Rep Article Radiomics is an emerging field using the extraction of quantitative features from medical images for tissue characterization. While MRI-based radiomics is still at an early stage, it showed some promising results in studies focusing on breast cancer patients in improving diagnoses and therapy response assessment. Nevertheless, the use of radiomics raises a number of issues regarding feature quantification and robustness. Therefore, our study aim was to determine the robustness of radiomics features extracted by two commonly used radiomics software with respect to variability in manual breast tumor segmentation on MRI. A total of 129 histologically confirmed breast tumors were segmented manually in three dimensions on the first post-contrast T1-weighted MR exam by four observers: a dedicated breast radiologist, a resident, a Ph.D. candidate, and a medical student. Robust features were assessed using the intraclass correlation coefficient (ICC > 0.9). The inter-observer variability was evaluated by the volumetric Dice Similarity Coefficient (DSC). The mean DSC for all tumors was 0.81 (range 0.19–0.96), indicating a good spatial overlap of the segmentations based on observers of varying expertise. In total, 41.6% (552/1328) and 32.8% (273/833) of all RadiomiX and Pyradiomics features, respectively, were identified as robust and were independent of inter-observer manual segmentation variability. Nature Publishing Group UK 2020-08-25 /pmc/articles/PMC7447771/ /pubmed/32843663 http://dx.doi.org/10.1038/s41598-020-70940-z Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Granzier, R. W. Y. Verbakel, N. M. H. Ibrahim, A. van Timmeren, J. E. van Nijnatten, T. J. A. Leijenaar, R. T. H. Lobbes, M. B. I. Smidt, M. L. Woodruff, H. C. MRI-based radiomics in breast cancer: feature robustness with respect to inter-observer segmentation variability |
title | MRI-based radiomics in breast cancer: feature robustness with respect to inter-observer segmentation variability |
title_full | MRI-based radiomics in breast cancer: feature robustness with respect to inter-observer segmentation variability |
title_fullStr | MRI-based radiomics in breast cancer: feature robustness with respect to inter-observer segmentation variability |
title_full_unstemmed | MRI-based radiomics in breast cancer: feature robustness with respect to inter-observer segmentation variability |
title_short | MRI-based radiomics in breast cancer: feature robustness with respect to inter-observer segmentation variability |
title_sort | mri-based radiomics in breast cancer: feature robustness with respect to inter-observer segmentation variability |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7447771/ https://www.ncbi.nlm.nih.gov/pubmed/32843663 http://dx.doi.org/10.1038/s41598-020-70940-z |
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