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29 immune-related genes pairs signature predict the prognosis of cervical cancer patients
To screen the key immune genes in the development of cervical cancer, construct immune related gene pairs (IRGPs), and evaluate their influence on the prognosis of cervical cancer. Tumor Genome Atlas (TCGA) database and geo database were downloaded as training set and validation set respectively, an...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7447790/ https://www.ncbi.nlm.nih.gov/pubmed/32843657 http://dx.doi.org/10.1038/s41598-020-70500-5 |
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author | Nie, Han Bu, Fanqin Xu, Jiasheng Li, Taoshen Huang, Jun |
author_facet | Nie, Han Bu, Fanqin Xu, Jiasheng Li, Taoshen Huang, Jun |
author_sort | Nie, Han |
collection | PubMed |
description | To screen the key immune genes in the development of cervical cancer, construct immune related gene pairs (IRGPs), and evaluate their influence on the prognosis of cervical cancer. Tumor Genome Atlas (TCGA) database and geo database were downloaded as training set and validation set respectively, and immune related gene data were downloaded from immport. IRGPs model is established by machine learning, and the model is analyzed and evaluated. Using the Uclcan to analyze the immune genes expression in cervical cancer, and to further explore the association with the expression level and the clinical stage and prognosis of cervical cancer. According to the analysis of training set, we identified 29 IRGPs as key gene pairs and constructed the model. The AUC value of the model was greater than 0.9, and the model group survival rate was conspicuous different (P < 0.001). The reliability of the model was confirmed in the validation group. Our IRGPs play an important role in the occurrence and development of cervical cancer, and can be used as a prognostic marker and potential new target of cervical cancer. |
format | Online Article Text |
id | pubmed-7447790 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-74477902020-08-26 29 immune-related genes pairs signature predict the prognosis of cervical cancer patients Nie, Han Bu, Fanqin Xu, Jiasheng Li, Taoshen Huang, Jun Sci Rep Article To screen the key immune genes in the development of cervical cancer, construct immune related gene pairs (IRGPs), and evaluate their influence on the prognosis of cervical cancer. Tumor Genome Atlas (TCGA) database and geo database were downloaded as training set and validation set respectively, and immune related gene data were downloaded from immport. IRGPs model is established by machine learning, and the model is analyzed and evaluated. Using the Uclcan to analyze the immune genes expression in cervical cancer, and to further explore the association with the expression level and the clinical stage and prognosis of cervical cancer. According to the analysis of training set, we identified 29 IRGPs as key gene pairs and constructed the model. The AUC value of the model was greater than 0.9, and the model group survival rate was conspicuous different (P < 0.001). The reliability of the model was confirmed in the validation group. Our IRGPs play an important role in the occurrence and development of cervical cancer, and can be used as a prognostic marker and potential new target of cervical cancer. Nature Publishing Group UK 2020-08-25 /pmc/articles/PMC7447790/ /pubmed/32843657 http://dx.doi.org/10.1038/s41598-020-70500-5 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Nie, Han Bu, Fanqin Xu, Jiasheng Li, Taoshen Huang, Jun 29 immune-related genes pairs signature predict the prognosis of cervical cancer patients |
title | 29 immune-related genes pairs signature predict the prognosis of cervical cancer patients |
title_full | 29 immune-related genes pairs signature predict the prognosis of cervical cancer patients |
title_fullStr | 29 immune-related genes pairs signature predict the prognosis of cervical cancer patients |
title_full_unstemmed | 29 immune-related genes pairs signature predict the prognosis of cervical cancer patients |
title_short | 29 immune-related genes pairs signature predict the prognosis of cervical cancer patients |
title_sort | 29 immune-related genes pairs signature predict the prognosis of cervical cancer patients |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7447790/ https://www.ncbi.nlm.nih.gov/pubmed/32843657 http://dx.doi.org/10.1038/s41598-020-70500-5 |
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