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Integrative Analysis of MAPK14 as a Potential Biomarker for Cardioembolic Stroke

The aim of this study was to obtain the candidate genes and biomarkers that are significantly related to cardioembolic stroke (CS) by applying bioinformatics analysis. In accordance with the results of the weighted gene coexpression network analysis (WGCNA) in the GSE58294 dataset, 11 CS-related coe...

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Autores principales: Li, Zhao, Xu, Li, Wang, Qingxiu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7448239/
https://www.ncbi.nlm.nih.gov/pubmed/32879891
http://dx.doi.org/10.1155/2020/9502820
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author Li, Zhao
Xu, Li
Wang, Qingxiu
author_facet Li, Zhao
Xu, Li
Wang, Qingxiu
author_sort Li, Zhao
collection PubMed
description The aim of this study was to obtain the candidate genes and biomarkers that are significantly related to cardioembolic stroke (CS) by applying bioinformatics analysis. In accordance with the results of the weighted gene coexpression network analysis (WGCNA) in the GSE58294 dataset, 11 CS-related coexpression network modules were identified in this study. Correlation analysis showed that the black and pink modules are significantly associated with CS. A total of 18 core genes in the black module and one core gene in the pink module were determined. We then identified differentially expressed genes (DEGs) of CS at 3 h, 5 h, and 24 h postonset. After performing intersection, it was found that 311 genes were coexpressed at these three time points. These genes were majorly enriched in positive regulation of transferase activity and regulation of peptidase activity. The abovementioned coexpressed DEGs were subjected to protein-protein interaction analysis and subnetwork module analysis. Subsequently, we used cytoHubba to obtain 11 key genes from DEGs. The intersection of the core genes screened from WGCNA and the key genes selected from DEGs yielded the MAPK14 gene. The expression level of MAPK14 on the receiver operating characteristic (ROC) curves of CS at 3 h, 5 h, and 24 h showed that the area under the ROC curve (AUC) was 0.923, 0.934, and 0.941, respectively. In a nutshell, MAPK14 screened out by using WGCNA showed differential expression in CS. We conclude that MAPK14 can be used as a potential biological marker of CS and exhibits potential to predict the physiopathological condition of CS patients.
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spelling pubmed-74482392020-09-01 Integrative Analysis of MAPK14 as a Potential Biomarker for Cardioembolic Stroke Li, Zhao Xu, Li Wang, Qingxiu Biomed Res Int Research Article The aim of this study was to obtain the candidate genes and biomarkers that are significantly related to cardioembolic stroke (CS) by applying bioinformatics analysis. In accordance with the results of the weighted gene coexpression network analysis (WGCNA) in the GSE58294 dataset, 11 CS-related coexpression network modules were identified in this study. Correlation analysis showed that the black and pink modules are significantly associated with CS. A total of 18 core genes in the black module and one core gene in the pink module were determined. We then identified differentially expressed genes (DEGs) of CS at 3 h, 5 h, and 24 h postonset. After performing intersection, it was found that 311 genes were coexpressed at these three time points. These genes were majorly enriched in positive regulation of transferase activity and regulation of peptidase activity. The abovementioned coexpressed DEGs were subjected to protein-protein interaction analysis and subnetwork module analysis. Subsequently, we used cytoHubba to obtain 11 key genes from DEGs. The intersection of the core genes screened from WGCNA and the key genes selected from DEGs yielded the MAPK14 gene. The expression level of MAPK14 on the receiver operating characteristic (ROC) curves of CS at 3 h, 5 h, and 24 h showed that the area under the ROC curve (AUC) was 0.923, 0.934, and 0.941, respectively. In a nutshell, MAPK14 screened out by using WGCNA showed differential expression in CS. We conclude that MAPK14 can be used as a potential biological marker of CS and exhibits potential to predict the physiopathological condition of CS patients. Hindawi 2020-08-17 /pmc/articles/PMC7448239/ /pubmed/32879891 http://dx.doi.org/10.1155/2020/9502820 Text en Copyright © 2020 Zhao Li et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Li, Zhao
Xu, Li
Wang, Qingxiu
Integrative Analysis of MAPK14 as a Potential Biomarker for Cardioembolic Stroke
title Integrative Analysis of MAPK14 as a Potential Biomarker for Cardioembolic Stroke
title_full Integrative Analysis of MAPK14 as a Potential Biomarker for Cardioembolic Stroke
title_fullStr Integrative Analysis of MAPK14 as a Potential Biomarker for Cardioembolic Stroke
title_full_unstemmed Integrative Analysis of MAPK14 as a Potential Biomarker for Cardioembolic Stroke
title_short Integrative Analysis of MAPK14 as a Potential Biomarker for Cardioembolic Stroke
title_sort integrative analysis of mapk14 as a potential biomarker for cardioembolic stroke
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7448239/
https://www.ncbi.nlm.nih.gov/pubmed/32879891
http://dx.doi.org/10.1155/2020/9502820
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