Cargando…

Deep learning and feature based medication classifications from EEG in a large clinical data set

The amount of freely available human phenotypic data is increasing daily, and yet little is known about the types of inferences or identifying characteristics that could reasonably be drawn from that data using new statistical methods. One data type of particular interest is electroencephalographica...

Descripción completa

Detalles Bibliográficos
Autores principales: Nahmias, David O., Civillico, Eugene F., Kontson, Kimberly L.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7450080/
https://www.ncbi.nlm.nih.gov/pubmed/32848165
http://dx.doi.org/10.1038/s41598-020-70569-y
_version_ 1783574749704617984
author Nahmias, David O.
Civillico, Eugene F.
Kontson, Kimberly L.
author_facet Nahmias, David O.
Civillico, Eugene F.
Kontson, Kimberly L.
author_sort Nahmias, David O.
collection PubMed
description The amount of freely available human phenotypic data is increasing daily, and yet little is known about the types of inferences or identifying characteristics that could reasonably be drawn from that data using new statistical methods. One data type of particular interest is electroencephalographical (EEG) data, collected noninvasively from humans in various behavioral contexts. The Temple University EEG corpus associates thousands of hours of de-identified EEG records with contemporaneous physician reports that include metadata that might be expected to show a measurable correlation with characteristics of the recorded signal. Given that machine learning methods applied to neurological signals are being used in emerging diagnostic applications, we leveraged this data source to test the confidence with which algorithms could predict, using a patient’s EEG record(s) as input, which medications were noted on the matching physician report. We comparatively assessed deep learning and feature-based approaches on their ability to distinguish between the assumed presence of Dilantin (phenytoin), Keppra (levetiracetam), or neither. Our methods could successfully distinguish between patients taking either anticonvulsant and those taking no medications; as well as between the two anticonvulsants. Further, we found different approaches to be most effective for different groups of classifications.
format Online
Article
Text
id pubmed-7450080
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-74500802020-09-01 Deep learning and feature based medication classifications from EEG in a large clinical data set Nahmias, David O. Civillico, Eugene F. Kontson, Kimberly L. Sci Rep Article The amount of freely available human phenotypic data is increasing daily, and yet little is known about the types of inferences or identifying characteristics that could reasonably be drawn from that data using new statistical methods. One data type of particular interest is electroencephalographical (EEG) data, collected noninvasively from humans in various behavioral contexts. The Temple University EEG corpus associates thousands of hours of de-identified EEG records with contemporaneous physician reports that include metadata that might be expected to show a measurable correlation with characteristics of the recorded signal. Given that machine learning methods applied to neurological signals are being used in emerging diagnostic applications, we leveraged this data source to test the confidence with which algorithms could predict, using a patient’s EEG record(s) as input, which medications were noted on the matching physician report. We comparatively assessed deep learning and feature-based approaches on their ability to distinguish between the assumed presence of Dilantin (phenytoin), Keppra (levetiracetam), or neither. Our methods could successfully distinguish between patients taking either anticonvulsant and those taking no medications; as well as between the two anticonvulsants. Further, we found different approaches to be most effective for different groups of classifications. Nature Publishing Group UK 2020-08-26 /pmc/articles/PMC7450080/ /pubmed/32848165 http://dx.doi.org/10.1038/s41598-020-70569-y Text en © This is a U.S. Government work and not under copyright protection in the US; foreign copyright protection may apply 2020 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Nahmias, David O.
Civillico, Eugene F.
Kontson, Kimberly L.
Deep learning and feature based medication classifications from EEG in a large clinical data set
title Deep learning and feature based medication classifications from EEG in a large clinical data set
title_full Deep learning and feature based medication classifications from EEG in a large clinical data set
title_fullStr Deep learning and feature based medication classifications from EEG in a large clinical data set
title_full_unstemmed Deep learning and feature based medication classifications from EEG in a large clinical data set
title_short Deep learning and feature based medication classifications from EEG in a large clinical data set
title_sort deep learning and feature based medication classifications from eeg in a large clinical data set
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7450080/
https://www.ncbi.nlm.nih.gov/pubmed/32848165
http://dx.doi.org/10.1038/s41598-020-70569-y
work_keys_str_mv AT nahmiasdavido deeplearningandfeaturebasedmedicationclassificationsfromeeginalargeclinicaldataset
AT civillicoeugenef deeplearningandfeaturebasedmedicationclassificationsfromeeginalargeclinicaldataset
AT kontsonkimberlyl deeplearningandfeaturebasedmedicationclassificationsfromeeginalargeclinicaldataset