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Structural and functional properties of Antarctic fish cytoglobins-1: Cold-reactivity in multi-ligand reactions

While the functions of the recently discovered cytoglobin, ubiquitously expressed in vertebrate tissues, remain uncertain, Antarctic fish provide unparalleled models to study novel protein traits that may arise from cold adaptation. We report here the spectral, ligand-binding and enzymatic propertie...

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Autores principales: Giordano, Daniela, Pesce, Alessandra, Vermeylen, Stijn, Abbruzzetti, Stefania, Nardini, Marco, Marchesani, Francesco, Berghmans, Herald, Seira, Constantí, Bruno, Stefano, Javier Luque, F., di Prisco, Guido, Ascenzi, Paolo, Dewilde, Sylvia, Bolognesi, Martino, Viappiani, Cristiano, Verde, Cinzia
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Research Network of Computational and Structural Biotechnology 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7451756/
https://www.ncbi.nlm.nih.gov/pubmed/32913582
http://dx.doi.org/10.1016/j.csbj.2020.08.007
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author Giordano, Daniela
Pesce, Alessandra
Vermeylen, Stijn
Abbruzzetti, Stefania
Nardini, Marco
Marchesani, Francesco
Berghmans, Herald
Seira, Constantí
Bruno, Stefano
Javier Luque, F.
di Prisco, Guido
Ascenzi, Paolo
Dewilde, Sylvia
Bolognesi, Martino
Viappiani, Cristiano
Verde, Cinzia
author_facet Giordano, Daniela
Pesce, Alessandra
Vermeylen, Stijn
Abbruzzetti, Stefania
Nardini, Marco
Marchesani, Francesco
Berghmans, Herald
Seira, Constantí
Bruno, Stefano
Javier Luque, F.
di Prisco, Guido
Ascenzi, Paolo
Dewilde, Sylvia
Bolognesi, Martino
Viappiani, Cristiano
Verde, Cinzia
author_sort Giordano, Daniela
collection PubMed
description While the functions of the recently discovered cytoglobin, ubiquitously expressed in vertebrate tissues, remain uncertain, Antarctic fish provide unparalleled models to study novel protein traits that may arise from cold adaptation. We report here the spectral, ligand-binding and enzymatic properties (peroxynitrite isomerization, nitrite-reductase activity) of cytoglobin-1 from two Antarctic fish, Chaenocephalus aceratus and Dissostichus mawsoni, and present the crystal structure of D. mawsoni cytoglobin-1. The Antarctic cytoglobins-1 display high O(2) affinity, scarcely compatible with an O(2)-supply role, a slow rate constant for nitrite-reductase activity, and do not catalyze peroxynitrite isomerization. Compared with mesophilic orthologues, the cold-adapted cytoglobins favor binding of exogenous ligands to the hexa-coordinated bis-histidyl species, a trait related to their higher rate constant for distal-His/heme-Fe dissociation relative to human cytoglobin. At the light of a remarkable 3D-structure conservation, the observed differences in ligand-binding kinetics may reflect Antarctic fish cytoglobin-1 specific features in the dynamics of the heme distal region and of protein matrix cavities, suggesting adaptation to functional requirements posed by the cold environment. Taken together, the biochemical and biophysical data presented suggest that in Antarctic fish, as in humans, cytoglobin-1 unlikely plays a role in O(2) transport, rather it may be involved in processes such as NO detoxification.
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spelling pubmed-74517562020-09-09 Structural and functional properties of Antarctic fish cytoglobins-1: Cold-reactivity in multi-ligand reactions Giordano, Daniela Pesce, Alessandra Vermeylen, Stijn Abbruzzetti, Stefania Nardini, Marco Marchesani, Francesco Berghmans, Herald Seira, Constantí Bruno, Stefano Javier Luque, F. di Prisco, Guido Ascenzi, Paolo Dewilde, Sylvia Bolognesi, Martino Viappiani, Cristiano Verde, Cinzia Comput Struct Biotechnol J Research Article While the functions of the recently discovered cytoglobin, ubiquitously expressed in vertebrate tissues, remain uncertain, Antarctic fish provide unparalleled models to study novel protein traits that may arise from cold adaptation. We report here the spectral, ligand-binding and enzymatic properties (peroxynitrite isomerization, nitrite-reductase activity) of cytoglobin-1 from two Antarctic fish, Chaenocephalus aceratus and Dissostichus mawsoni, and present the crystal structure of D. mawsoni cytoglobin-1. The Antarctic cytoglobins-1 display high O(2) affinity, scarcely compatible with an O(2)-supply role, a slow rate constant for nitrite-reductase activity, and do not catalyze peroxynitrite isomerization. Compared with mesophilic orthologues, the cold-adapted cytoglobins favor binding of exogenous ligands to the hexa-coordinated bis-histidyl species, a trait related to their higher rate constant for distal-His/heme-Fe dissociation relative to human cytoglobin. At the light of a remarkable 3D-structure conservation, the observed differences in ligand-binding kinetics may reflect Antarctic fish cytoglobin-1 specific features in the dynamics of the heme distal region and of protein matrix cavities, suggesting adaptation to functional requirements posed by the cold environment. Taken together, the biochemical and biophysical data presented suggest that in Antarctic fish, as in humans, cytoglobin-1 unlikely plays a role in O(2) transport, rather it may be involved in processes such as NO detoxification. Research Network of Computational and Structural Biotechnology 2020-08-12 /pmc/articles/PMC7451756/ /pubmed/32913582 http://dx.doi.org/10.1016/j.csbj.2020.08.007 Text en © 2020 The Authors http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Research Article
Giordano, Daniela
Pesce, Alessandra
Vermeylen, Stijn
Abbruzzetti, Stefania
Nardini, Marco
Marchesani, Francesco
Berghmans, Herald
Seira, Constantí
Bruno, Stefano
Javier Luque, F.
di Prisco, Guido
Ascenzi, Paolo
Dewilde, Sylvia
Bolognesi, Martino
Viappiani, Cristiano
Verde, Cinzia
Structural and functional properties of Antarctic fish cytoglobins-1: Cold-reactivity in multi-ligand reactions
title Structural and functional properties of Antarctic fish cytoglobins-1: Cold-reactivity in multi-ligand reactions
title_full Structural and functional properties of Antarctic fish cytoglobins-1: Cold-reactivity in multi-ligand reactions
title_fullStr Structural and functional properties of Antarctic fish cytoglobins-1: Cold-reactivity in multi-ligand reactions
title_full_unstemmed Structural and functional properties of Antarctic fish cytoglobins-1: Cold-reactivity in multi-ligand reactions
title_short Structural and functional properties of Antarctic fish cytoglobins-1: Cold-reactivity in multi-ligand reactions
title_sort structural and functional properties of antarctic fish cytoglobins-1: cold-reactivity in multi-ligand reactions
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7451756/
https://www.ncbi.nlm.nih.gov/pubmed/32913582
http://dx.doi.org/10.1016/j.csbj.2020.08.007
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