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Transcriptome dataset from bark and latex tissues of three Hevea brasiliensis clones

Hevea brasiliensis is exploited for its latex production, and it is the only viable source of natural rubber worldwide. The demand for natural rubber remains high due its high-quality properties, which synthetic rubber cannot compete with. In this paper, we present transcriptomic data and analysis o...

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Autores principales: Abu Bakar, Mohd Fahmi, Kamerkar, Urwashi, Abdul Rahman, Siti Nurfazilah, Muhd Sakaff, Muhd Khairul Luqman, Othman, Ahmad Sofiman
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7452566/
https://www.ncbi.nlm.nih.gov/pubmed/32904357
http://dx.doi.org/10.1016/j.dib.2020.106188
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author Abu Bakar, Mohd Fahmi
Kamerkar, Urwashi
Abdul Rahman, Siti Nurfazilah
Muhd Sakaff, Muhd Khairul Luqman
Othman, Ahmad Sofiman
author_facet Abu Bakar, Mohd Fahmi
Kamerkar, Urwashi
Abdul Rahman, Siti Nurfazilah
Muhd Sakaff, Muhd Khairul Luqman
Othman, Ahmad Sofiman
author_sort Abu Bakar, Mohd Fahmi
collection PubMed
description Hevea brasiliensis is exploited for its latex production, and it is the only viable source of natural rubber worldwide. The demand for natural rubber remains high due its high-quality properties, which synthetic rubber cannot compete with. In this paper, we present transcriptomic data and analysis of three H. brasiliensis clones using tissue from latex and bark tissues collected from 10-year-old plant. The combined, assembled transcripts were mapped onto an H. brasiliensis draft genome. Gene ontology analysis showed that the most abundant transcripts related to molecular functions, followed by biological processes and cellular components. Simple sequence repeats (SSR) and single nucleotide polymorphisms (SNP) were also identified, and these can be useful for selection of parental and new clones in a breeding program. Data generated by RNA sequencing were deposited in the NCBI public repository under accession number PRJNA629890.
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spelling pubmed-74525662020-09-03 Transcriptome dataset from bark and latex tissues of three Hevea brasiliensis clones Abu Bakar, Mohd Fahmi Kamerkar, Urwashi Abdul Rahman, Siti Nurfazilah Muhd Sakaff, Muhd Khairul Luqman Othman, Ahmad Sofiman Data Brief Biochemistry, Genetics and Molecular Biology Hevea brasiliensis is exploited for its latex production, and it is the only viable source of natural rubber worldwide. The demand for natural rubber remains high due its high-quality properties, which synthetic rubber cannot compete with. In this paper, we present transcriptomic data and analysis of three H. brasiliensis clones using tissue from latex and bark tissues collected from 10-year-old plant. The combined, assembled transcripts were mapped onto an H. brasiliensis draft genome. Gene ontology analysis showed that the most abundant transcripts related to molecular functions, followed by biological processes and cellular components. Simple sequence repeats (SSR) and single nucleotide polymorphisms (SNP) were also identified, and these can be useful for selection of parental and new clones in a breeding program. Data generated by RNA sequencing were deposited in the NCBI public repository under accession number PRJNA629890. Elsevier 2020-08-17 /pmc/articles/PMC7452566/ /pubmed/32904357 http://dx.doi.org/10.1016/j.dib.2020.106188 Text en © 2020 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Biochemistry, Genetics and Molecular Biology
Abu Bakar, Mohd Fahmi
Kamerkar, Urwashi
Abdul Rahman, Siti Nurfazilah
Muhd Sakaff, Muhd Khairul Luqman
Othman, Ahmad Sofiman
Transcriptome dataset from bark and latex tissues of three Hevea brasiliensis clones
title Transcriptome dataset from bark and latex tissues of three Hevea brasiliensis clones
title_full Transcriptome dataset from bark and latex tissues of three Hevea brasiliensis clones
title_fullStr Transcriptome dataset from bark and latex tissues of three Hevea brasiliensis clones
title_full_unstemmed Transcriptome dataset from bark and latex tissues of three Hevea brasiliensis clones
title_short Transcriptome dataset from bark and latex tissues of three Hevea brasiliensis clones
title_sort transcriptome dataset from bark and latex tissues of three hevea brasiliensis clones
topic Biochemistry, Genetics and Molecular Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7452566/
https://www.ncbi.nlm.nih.gov/pubmed/32904357
http://dx.doi.org/10.1016/j.dib.2020.106188
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