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Accuracy of identifying incident stroke cases from linked health care data in UK Biobank

OBJECTIVE: In UK Biobank (UKB), a large population-based prospective study, cases of many diseases are ascertained through linkage to routinely collected, coded national health datasets. We assessed the accuracy of these for identifying incident strokes. METHODS: In a regional UKB subpopulation (n =...

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Autores principales: Rannikmäe, Kristiina, Ngoh, Kenneth, Bush, Kathryn, Al-Shahi Salman, Rustam, Doubal, Fergus, Flaig, Robin, Henshall, David E., Hutchison, Aidan, Nolan, John, Osborne, Scott, Samarasekera, Neshika, Schnier, Christian, Whiteley, Will, Wilkinson, Tim, Wilson, Kirsty, Woodfield, Rebecca, Zhang, Qiuli, Allen, Naomi, Sudlow, Cathie L.M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Lippincott Williams & Wilkins 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7455356/
https://www.ncbi.nlm.nih.gov/pubmed/32616677
http://dx.doi.org/10.1212/WNL.0000000000009924
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author Rannikmäe, Kristiina
Ngoh, Kenneth
Bush, Kathryn
Al-Shahi Salman, Rustam
Doubal, Fergus
Flaig, Robin
Henshall, David E.
Hutchison, Aidan
Nolan, John
Osborne, Scott
Samarasekera, Neshika
Schnier, Christian
Whiteley, Will
Wilkinson, Tim
Wilson, Kirsty
Woodfield, Rebecca
Zhang, Qiuli
Allen, Naomi
Sudlow, Cathie L.M.
author_facet Rannikmäe, Kristiina
Ngoh, Kenneth
Bush, Kathryn
Al-Shahi Salman, Rustam
Doubal, Fergus
Flaig, Robin
Henshall, David E.
Hutchison, Aidan
Nolan, John
Osborne, Scott
Samarasekera, Neshika
Schnier, Christian
Whiteley, Will
Wilkinson, Tim
Wilson, Kirsty
Woodfield, Rebecca
Zhang, Qiuli
Allen, Naomi
Sudlow, Cathie L.M.
author_sort Rannikmäe, Kristiina
collection PubMed
description OBJECTIVE: In UK Biobank (UKB), a large population-based prospective study, cases of many diseases are ascertained through linkage to routinely collected, coded national health datasets. We assessed the accuracy of these for identifying incident strokes. METHODS: In a regional UKB subpopulation (n = 17,249), we identified all participants with ≥1 code signifying a first stroke after recruitment (incident stroke-coded cases) in linked hospital admission, primary care, or death record data. Stroke physicians reviewed their full electronic patient records (EPRs) and generated reference standard diagnoses. We evaluated the number and proportion of cases that were true-positives (i.e., positive predictive value [PPV]) for all codes combined and by code source and type. RESULTS: Of 232 incident stroke-coded cases, 97% had EPR information available. Data sources were 30% hospital admission only, 39% primary care only, 28% hospital and primary care, and 3% death records only. While 42% of cases were coded as unspecified stroke type, review of EPRs enabled a pathologic type to be assigned in >99%. PPVs (95% confidence intervals) were 79% (73%–84%) for any stroke (89% for hospital admission codes, 80% for primary care codes) and 83% (74%–90%) for ischemic stroke. PPVs for small numbers of death record and hemorrhagic stroke codes were low but imprecise. CONCLUSIONS: Stroke and ischemic stroke cases in UKB can be ascertained through linked health datasets with sufficient accuracy for many research studies. Further work is needed to understand the accuracy of death record and hemorrhagic stroke codes and to develop scalable approaches for better identifying stroke types.
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spelling pubmed-74553562020-09-04 Accuracy of identifying incident stroke cases from linked health care data in UK Biobank Rannikmäe, Kristiina Ngoh, Kenneth Bush, Kathryn Al-Shahi Salman, Rustam Doubal, Fergus Flaig, Robin Henshall, David E. Hutchison, Aidan Nolan, John Osborne, Scott Samarasekera, Neshika Schnier, Christian Whiteley, Will Wilkinson, Tim Wilson, Kirsty Woodfield, Rebecca Zhang, Qiuli Allen, Naomi Sudlow, Cathie L.M. Neurology Article OBJECTIVE: In UK Biobank (UKB), a large population-based prospective study, cases of many diseases are ascertained through linkage to routinely collected, coded national health datasets. We assessed the accuracy of these for identifying incident strokes. METHODS: In a regional UKB subpopulation (n = 17,249), we identified all participants with ≥1 code signifying a first stroke after recruitment (incident stroke-coded cases) in linked hospital admission, primary care, or death record data. Stroke physicians reviewed their full electronic patient records (EPRs) and generated reference standard diagnoses. We evaluated the number and proportion of cases that were true-positives (i.e., positive predictive value [PPV]) for all codes combined and by code source and type. RESULTS: Of 232 incident stroke-coded cases, 97% had EPR information available. Data sources were 30% hospital admission only, 39% primary care only, 28% hospital and primary care, and 3% death records only. While 42% of cases were coded as unspecified stroke type, review of EPRs enabled a pathologic type to be assigned in >99%. PPVs (95% confidence intervals) were 79% (73%–84%) for any stroke (89% for hospital admission codes, 80% for primary care codes) and 83% (74%–90%) for ischemic stroke. PPVs for small numbers of death record and hemorrhagic stroke codes were low but imprecise. CONCLUSIONS: Stroke and ischemic stroke cases in UKB can be ascertained through linked health datasets with sufficient accuracy for many research studies. Further work is needed to understand the accuracy of death record and hemorrhagic stroke codes and to develop scalable approaches for better identifying stroke types. Lippincott Williams & Wilkins 2020-08-11 /pmc/articles/PMC7455356/ /pubmed/32616677 http://dx.doi.org/10.1212/WNL.0000000000009924 Text en Copyright © 2020 The Author(s). Published by Wolters Kluwer Health, Inc. on behalf of the American Academy of Neurology. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License 4.0 (CC BY) (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Article
Rannikmäe, Kristiina
Ngoh, Kenneth
Bush, Kathryn
Al-Shahi Salman, Rustam
Doubal, Fergus
Flaig, Robin
Henshall, David E.
Hutchison, Aidan
Nolan, John
Osborne, Scott
Samarasekera, Neshika
Schnier, Christian
Whiteley, Will
Wilkinson, Tim
Wilson, Kirsty
Woodfield, Rebecca
Zhang, Qiuli
Allen, Naomi
Sudlow, Cathie L.M.
Accuracy of identifying incident stroke cases from linked health care data in UK Biobank
title Accuracy of identifying incident stroke cases from linked health care data in UK Biobank
title_full Accuracy of identifying incident stroke cases from linked health care data in UK Biobank
title_fullStr Accuracy of identifying incident stroke cases from linked health care data in UK Biobank
title_full_unstemmed Accuracy of identifying incident stroke cases from linked health care data in UK Biobank
title_short Accuracy of identifying incident stroke cases from linked health care data in UK Biobank
title_sort accuracy of identifying incident stroke cases from linked health care data in uk biobank
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7455356/
https://www.ncbi.nlm.nih.gov/pubmed/32616677
http://dx.doi.org/10.1212/WNL.0000000000009924
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