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Transcriptome view of a killer: African swine fever virus
African swine fever virus (ASFV) represents a severe threat to global agriculture with the world's domestic pig population reduced by a quarter following recent outbreaks in Europe and Asia. Like other nucleocytoplasmic large DNA viruses, ASFV encodes a transcription apparatus including a eukar...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Portland Press Ltd.
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7458399/ https://www.ncbi.nlm.nih.gov/pubmed/32725217 http://dx.doi.org/10.1042/BST20191108 |
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author | Cackett, Gwenny Sýkora, Michal Werner, Finn |
author_facet | Cackett, Gwenny Sýkora, Michal Werner, Finn |
author_sort | Cackett, Gwenny |
collection | PubMed |
description | African swine fever virus (ASFV) represents a severe threat to global agriculture with the world's domestic pig population reduced by a quarter following recent outbreaks in Europe and Asia. Like other nucleocytoplasmic large DNA viruses, ASFV encodes a transcription apparatus including a eukaryote-like RNA polymerase along with a combination of virus-specific, and host-related transcription factors homologous to the TATA-binding protein (TBP) and TFIIB. Despite its high impact, the molecular basis and temporal regulation of ASFV transcription is not well understood. Our lab recently applied deep sequencing approaches to characterise the viral transcriptome and gene expression during early and late ASFV infection. We have characterised the viral promoter elements and termination signatures, by mapping the RNA-5′ and RNA-3′ termini at single nucleotide resolution. In this review, we discuss the emerging field of ASFV transcripts, transcription, and transcriptomics. |
format | Online Article Text |
id | pubmed-7458399 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Portland Press Ltd. |
record_format | MEDLINE/PubMed |
spelling | pubmed-74583992020-09-04 Transcriptome view of a killer: African swine fever virus Cackett, Gwenny Sýkora, Michal Werner, Finn Biochem Soc Trans Review Articles African swine fever virus (ASFV) represents a severe threat to global agriculture with the world's domestic pig population reduced by a quarter following recent outbreaks in Europe and Asia. Like other nucleocytoplasmic large DNA viruses, ASFV encodes a transcription apparatus including a eukaryote-like RNA polymerase along with a combination of virus-specific, and host-related transcription factors homologous to the TATA-binding protein (TBP) and TFIIB. Despite its high impact, the molecular basis and temporal regulation of ASFV transcription is not well understood. Our lab recently applied deep sequencing approaches to characterise the viral transcriptome and gene expression during early and late ASFV infection. We have characterised the viral promoter elements and termination signatures, by mapping the RNA-5′ and RNA-3′ termini at single nucleotide resolution. In this review, we discuss the emerging field of ASFV transcripts, transcription, and transcriptomics. Portland Press Ltd. 2020-08-28 2020-07-29 /pmc/articles/PMC7458399/ /pubmed/32725217 http://dx.doi.org/10.1042/BST20191108 Text en © 2020 The Author(s) https://creativecommons.org/licenses/by/4.0/ This is an open access article published by Portland Press Limited on behalf of the Biochemical Society and distributed under the Creative Commons Attribution License 4.0 (CC BY) (https://creativecommons.org/licenses/by/4.0/) . Open access for this article was enabled by the participation of University College London in an all-inclusive Read & Publish pilot with Portland Press and the Biochemical Society under a transformative agreement with JISC. |
spellingShingle | Review Articles Cackett, Gwenny Sýkora, Michal Werner, Finn Transcriptome view of a killer: African swine fever virus |
title | Transcriptome view of a killer: African swine fever virus |
title_full | Transcriptome view of a killer: African swine fever virus |
title_fullStr | Transcriptome view of a killer: African swine fever virus |
title_full_unstemmed | Transcriptome view of a killer: African swine fever virus |
title_short | Transcriptome view of a killer: African swine fever virus |
title_sort | transcriptome view of a killer: african swine fever virus |
topic | Review Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7458399/ https://www.ncbi.nlm.nih.gov/pubmed/32725217 http://dx.doi.org/10.1042/BST20191108 |
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