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Embedding-theory-based simulations using experimental electron densities for the environment
The basic idea of frozen-density embedding theory (FDET) is the constrained minimization of the Hohenberg–Kohn density functional E (HK)[ρ] performed using the auxiliary functional [Image: see text], where Ψ(A) is the embedded N (A)-electron wavefunction and ρ(B)(r) is a non-negative function in rea...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7459768/ https://www.ncbi.nlm.nih.gov/pubmed/32869754 http://dx.doi.org/10.1107/S2053273320008062 |
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author | Ricardi, Niccolò Ernst, Michelle Macchi, Piero Wesolowski, Tomasz Adam |
author_facet | Ricardi, Niccolò Ernst, Michelle Macchi, Piero Wesolowski, Tomasz Adam |
author_sort | Ricardi, Niccolò |
collection | PubMed |
description | The basic idea of frozen-density embedding theory (FDET) is the constrained minimization of the Hohenberg–Kohn density functional E (HK)[ρ] performed using the auxiliary functional [Image: see text], where Ψ(A) is the embedded N (A)-electron wavefunction and ρ(B)(r) is a non-negative function in real space integrating to a given number of electrons N (B). This choice of independent variables in the total energy functional [Image: see text] makes it possible to treat the corresponding two components of the total density using different methods in multi-level simulations. The application of FDET using ρ(B)(r) reconstructed from X-ray diffraction data for a molecular crystal is demonstrated for the first time. For eight hydrogen-bonded clusters involving a chromophore (represented as Ψ(A)) and the glycylglycine molecule [represented as ρ(B)(r)], FDET is used to derive excitation energies. It is shown that experimental densities are suitable for use as ρ(B)(r) in FDET-based simulations. |
format | Online Article Text |
id | pubmed-7459768 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-74597682020-09-15 Embedding-theory-based simulations using experimental electron densities for the environment Ricardi, Niccolò Ernst, Michelle Macchi, Piero Wesolowski, Tomasz Adam Acta Crystallogr A Found Adv Research Papers The basic idea of frozen-density embedding theory (FDET) is the constrained minimization of the Hohenberg–Kohn density functional E (HK)[ρ] performed using the auxiliary functional [Image: see text], where Ψ(A) is the embedded N (A)-electron wavefunction and ρ(B)(r) is a non-negative function in real space integrating to a given number of electrons N (B). This choice of independent variables in the total energy functional [Image: see text] makes it possible to treat the corresponding two components of the total density using different methods in multi-level simulations. The application of FDET using ρ(B)(r) reconstructed from X-ray diffraction data for a molecular crystal is demonstrated for the first time. For eight hydrogen-bonded clusters involving a chromophore (represented as Ψ(A)) and the glycylglycine molecule [represented as ρ(B)(r)], FDET is used to derive excitation energies. It is shown that experimental densities are suitable for use as ρ(B)(r) in FDET-based simulations. International Union of Crystallography 2020-07-20 /pmc/articles/PMC7459768/ /pubmed/32869754 http://dx.doi.org/10.1107/S2053273320008062 Text en © Niccolò Ricardi et al. 2020 http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Research Papers Ricardi, Niccolò Ernst, Michelle Macchi, Piero Wesolowski, Tomasz Adam Embedding-theory-based simulations using experimental electron densities for the environment |
title | Embedding-theory-based simulations using experimental electron densities for the environment |
title_full | Embedding-theory-based simulations using experimental electron densities for the environment |
title_fullStr | Embedding-theory-based simulations using experimental electron densities for the environment |
title_full_unstemmed | Embedding-theory-based simulations using experimental electron densities for the environment |
title_short | Embedding-theory-based simulations using experimental electron densities for the environment |
title_sort | embedding-theory-based simulations using experimental electron densities for the environment |
topic | Research Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7459768/ https://www.ncbi.nlm.nih.gov/pubmed/32869754 http://dx.doi.org/10.1107/S2053273320008062 |
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