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Multimodal Brain Tumor Classification Using Deep Learning and Robust Feature Selection: A Machine Learning Application for Radiologists

Manual identification of brain tumors is an error-prone and tedious process for radiologists; therefore, it is crucial to adopt an automated system. The binary classification process, such as malignant or benign is relatively trivial; whereas, the multimodal brain tumors classification (T1, T2, T1CE...

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Autores principales: Khan, Muhammad Attique, Ashraf, Imran, Alhaisoni, Majed, Damaševičius, Robertas, Scherer, Rafal, Rehman, Amjad, Bukhari, Syed Ahmad Chan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7459797/
https://www.ncbi.nlm.nih.gov/pubmed/32781795
http://dx.doi.org/10.3390/diagnostics10080565
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author Khan, Muhammad Attique
Ashraf, Imran
Alhaisoni, Majed
Damaševičius, Robertas
Scherer, Rafal
Rehman, Amjad
Bukhari, Syed Ahmad Chan
author_facet Khan, Muhammad Attique
Ashraf, Imran
Alhaisoni, Majed
Damaševičius, Robertas
Scherer, Rafal
Rehman, Amjad
Bukhari, Syed Ahmad Chan
author_sort Khan, Muhammad Attique
collection PubMed
description Manual identification of brain tumors is an error-prone and tedious process for radiologists; therefore, it is crucial to adopt an automated system. The binary classification process, such as malignant or benign is relatively trivial; whereas, the multimodal brain tumors classification (T1, T2, T1CE, and Flair) is a challenging task for radiologists. Here, we present an automated multimodal classification method using deep learning for brain tumor type classification. The proposed method consists of five core steps. In the first step, the linear contrast stretching is employed using edge-based histogram equalization and discrete cosine transform (DCT). In the second step, deep learning feature extraction is performed. By utilizing transfer learning, two pre-trained convolutional neural network (CNN) models, namely VGG16 and VGG19, were used for feature extraction. In the third step, a correntropy-based joint learning approach was implemented along with the extreme learning machine (ELM) for the selection of best features. In the fourth step, the partial least square (PLS)-based robust covariant features were fused in one matrix. The combined matrix was fed to ELM for final classification. The proposed method was validated on the BraTS datasets and an accuracy of 97.8%, 96.9%, 92.5% for BraTs2015, BraTs2017, and BraTs2018, respectively, was achieved.
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spelling pubmed-74597972020-09-02 Multimodal Brain Tumor Classification Using Deep Learning and Robust Feature Selection: A Machine Learning Application for Radiologists Khan, Muhammad Attique Ashraf, Imran Alhaisoni, Majed Damaševičius, Robertas Scherer, Rafal Rehman, Amjad Bukhari, Syed Ahmad Chan Diagnostics (Basel) Article Manual identification of brain tumors is an error-prone and tedious process for radiologists; therefore, it is crucial to adopt an automated system. The binary classification process, such as malignant or benign is relatively trivial; whereas, the multimodal brain tumors classification (T1, T2, T1CE, and Flair) is a challenging task for radiologists. Here, we present an automated multimodal classification method using deep learning for brain tumor type classification. The proposed method consists of five core steps. In the first step, the linear contrast stretching is employed using edge-based histogram equalization and discrete cosine transform (DCT). In the second step, deep learning feature extraction is performed. By utilizing transfer learning, two pre-trained convolutional neural network (CNN) models, namely VGG16 and VGG19, were used for feature extraction. In the third step, a correntropy-based joint learning approach was implemented along with the extreme learning machine (ELM) for the selection of best features. In the fourth step, the partial least square (PLS)-based robust covariant features were fused in one matrix. The combined matrix was fed to ELM for final classification. The proposed method was validated on the BraTS datasets and an accuracy of 97.8%, 96.9%, 92.5% for BraTs2015, BraTs2017, and BraTs2018, respectively, was achieved. MDPI 2020-08-06 /pmc/articles/PMC7459797/ /pubmed/32781795 http://dx.doi.org/10.3390/diagnostics10080565 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Khan, Muhammad Attique
Ashraf, Imran
Alhaisoni, Majed
Damaševičius, Robertas
Scherer, Rafal
Rehman, Amjad
Bukhari, Syed Ahmad Chan
Multimodal Brain Tumor Classification Using Deep Learning and Robust Feature Selection: A Machine Learning Application for Radiologists
title Multimodal Brain Tumor Classification Using Deep Learning and Robust Feature Selection: A Machine Learning Application for Radiologists
title_full Multimodal Brain Tumor Classification Using Deep Learning and Robust Feature Selection: A Machine Learning Application for Radiologists
title_fullStr Multimodal Brain Tumor Classification Using Deep Learning and Robust Feature Selection: A Machine Learning Application for Radiologists
title_full_unstemmed Multimodal Brain Tumor Classification Using Deep Learning and Robust Feature Selection: A Machine Learning Application for Radiologists
title_short Multimodal Brain Tumor Classification Using Deep Learning and Robust Feature Selection: A Machine Learning Application for Radiologists
title_sort multimodal brain tumor classification using deep learning and robust feature selection: a machine learning application for radiologists
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7459797/
https://www.ncbi.nlm.nih.gov/pubmed/32781795
http://dx.doi.org/10.3390/diagnostics10080565
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